View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_46 (Length: 246)
Name: NF20983_high_46
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41380452 - 41380206
Alignment:
| Q |
1 |
attgagtttcaattgaagaacaaatgaaggaaattacttctattcaatgatatttct-gtgtgtggaagattcaaagannnnnnnnnncttgcttaaatg |
99 |
Q |
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| T |
41380452 |
attgagtttcaattgaagaacaaatgaaggaaattgcttgtattcaatgatattttttgtgtgtggaagattcaatgattttttttt-cttgcttaaatg |
41380354 |
T |
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| Q |
100 |
ttttaagtgaagctttttt-ggtgagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaata |
198 |
Q |
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| T |
41380353 |
ttttaagtgaagctttttttggggagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatg |
41380254 |
T |
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| Q |
199 |
gatgagaaaattaaactacagatgcattatatgagctaggttttgtaa |
246 |
Q |
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| T |
41380253 |
gatgagaaaattaaactacagatacattatatgagctaggttttgtaa |
41380206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 8043742 - 8043816
Alignment:
| Q |
2 |
ttgagtttcaattgaagaacaaa-tgaaggaaattacttctattcaatgata-tttctgtgtgtggaagattcaa |
74 |
Q |
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| T |
8043742 |
ttgagtttcaatggtagaacaaaatgaaggaaattgtttctattcaatgatattttttgtgtgtggaagattcaa |
8043816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 8043890 - 8043984
Alignment:
| Q |
149 |
tctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaa-ttaaactacagatgcattatatgagctaggtttt |
242 |
Q |
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| T |
8043890 |
tctataatagatgcttgattgatgtacaacacatagaaactatgaaaaaggatgagaaaaattaaactacagatacataatatgagttaggtttt |
8043984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 8033905 - 8034012
Alignment:
| Q |
144 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgt---aaaaatagatgagaaaattaaactacagatgcat----tatatgagcta |
236 |
Q |
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| T |
8033905 |
tagcatctataatagatgcttggttgaagtacaaaa-ttagaaagtattaaaaaaaaaaatgag-aaattaagctacagatacattatatatatgagcta |
8034002 |
T |
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| Q |
237 |
ggttttgtaa |
246 |
Q |
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| T |
8034003 |
ggttttgtaa |
8034012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 7969879 - 7969835
Alignment:
| Q |
144 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagt |
189 |
Q |
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| T |
7969879 |
tagcatctataatagatgcttgattgaagtacaaaa-ttagaaagt |
7969835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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