View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20983_high_6 (Length: 562)
Name: NF20983_high_6
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 12614930 - 12615462
Alignment:
| Q |
16 |
attgactcgaggagaatgaacatcagatcttgagagaaacacacttcaatgtcttaaatcagtactatctgaccaacccaggtggcttaatgcaagagtg |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| | ||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
12614930 |
attgactcgaggagaatgaacatgagatcttgagaaaaacacacttcaatgtcctaaatc-gcactatctaaccaacccaagtggcttaatgcaagagtg |
12615028 |
T |
|
| Q |
116 |
gattaattataactagagtgtattgtaactaactatatactactgcatactatttaagcctcttaactgaatcctaacaacatatatatgtcaattgctt |
215 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12615029 |
gattaattgtaactagagtgttttgtaactaactatatactactgcatactatttaagcctcttagctgaatcctaacaacatatatatgtcaattgctt |
12615128 |
T |
|
| Q |
216 |
gcatggcaa-ttcagttaattagtttgatagtaagttccttggatctcaagtaacgacatcttcattatgtttttacagtccccccagctagagcttggt |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12615129 |
gcatggcaaattcagttaattagtttgatagtaagttccttggatctcaagtaacgacatcttcattatgtttttacagtccccccagctagagcttggt |
12615228 |
T |
|
| Q |
315 |
atacatatctaccatgtctcgcttggggaagaaattggttgcttgttcactacttgaaattggttgcaatttgatggcgccttctggaactttgccatga |
414 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12615229 |
atacatatctaccatgtctcgcttggtgaagaaattagctgcttgttcactacttgaaattggttgcaatttgatggtgccttctggaactttgccatga |
12615328 |
T |
|
| Q |
415 |
acaaaatggtagtttatccatatgtttggttctttcatggaacataggattaacagttatatgtaagacactttgattgtcataattcaacactagaact |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12615329 |
acaaaatggtagtttatccatatgtttggttctttcatggaacataggattaacagttatatgtaagacactttgattgtcataattcaacattagaact |
12615428 |
T |
|
| Q |
515 |
ctagtatattgcactttgagatcatcttgaaagt |
548 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
12615429 |
ctagtatattgcactttgagatcatcttgcaagt |
12615462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 125 - 293
Target Start/End: Complemental strand, 12582196 - 12582029
Alignment:
| Q |
125 |
taactagagtgtattgtaactaactatatactactgcatactatttaagcctcttaactgaatcctaacaacatatatat--gtcaattgcttgcatggc |
222 |
Q |
| |
|
|||||||| || | ||||||||| || |||||||||| |||||| |||||||| ||||||||| || |||| | |||| |||||| ||||| |||| |
|
|
| T |
12582196 |
taactagaatgcagtgtaactaattacatactactgcgtactatctaagcctcgaaactgaatcttagcaacctctataaccgtcaatcgcttgtgtggc |
12582097 |
T |
|
| Q |
223 |
aa-ttcagttaattagtttgatagtaagttccttggatctcaagtaacgacatcttcattatgtttttacag |
293 |
Q |
| |
|
|| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
12582096 |
aaattcagtta----gtttgatagtaagttacttggatctcaagtaactacatcttcattatgttttaacag |
12582029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 12581943 - 12581864
Alignment:
| Q |
342 |
gaagaaattggttgcttgttcactacttgaaattggttgcaatttgatggcgccttctggaactttgccatgaacaaaatg |
422 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| | ||||| |||||| ||||||| ||||||| || |||||||||| |
|
|
| T |
12581943 |
gaagaaatcagttgcttgttcactacttg-aattgatagcaatctgatggtgccttcttgaactttctcacgaacaaaatg |
12581864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University