View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_high_8 (Length: 534)

Name: NF20983_high_8
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_high_8
NF20983_high_8
[»] chr6 (11 HSPs)
chr6 (11-230)||(4559171-4559390)
chr6 (235-402)||(4559418-4559585)
chr6 (235-402)||(4566276-4566443)
chr6 (235-402)||(4573290-4573457)
chr6 (63-200)||(4573130-4573267)
chr6 (80-200)||(4566133-4566253)
chr6 (423-518)||(4560209-4560304)
chr6 (446-515)||(4573926-4573995)
chr6 (423-492)||(4567935-4568001)
chr6 (114-184)||(4615168-4615237)
chr6 (74-127)||(4591385-4591438)
[»] chr8 (2 HSPs)
chr8 (114-204)||(16684943-16685033)
chr8 (243-380)||(16684742-16684881)
[»] chr4 (1 HSPs)
chr4 (68-135)||(37214216-37214283)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 4559171 - 4559390
Alignment:
Q  11 catagggtctgactaggcttatctaagatccctaatgtaaccaacttgcatctaataataactaacttataactatcttgaaaaatatcaaactaatttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4559171 catagggtctgactaggcttatctaagatccctaatgtaaccaacttgcatctaatcataactaacttataactatcttgaaaaatatcaaactaatttt 4559270  T
Q  111 aacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagtcnnnnn 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  4559271 aacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagtcaaaaa 4559370  T
Q  211 nnnggaaaatcttcatatgc 230  Q
       |||||||||||||||||    
T  4559371 aaaggaaaatcttcatatgc 4559390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 235 - 402
Target Start/End: Original strand, 4559418 - 4559585
Alignment:
Q  235 agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4559418 agtttcaaaattgaactagatgacacttttattcaagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 4559517  T
Q  335 tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4559518 tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac 4559585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 235 - 402
Target Start/End: Original strand, 4566276 - 4566443
Alignment:
Q  235 agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 334  Q
    |||||||||||||||||||| | ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4566276 agtttcaaaattgaactagaaggcacttctattcaagtaagtataagatagttctgacatcaaagatttttgttgtacaaagaaaataattatgtccact 4566375  T
Q  335 tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  4566376 tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattagacatcac 4566443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 235 - 402
Target Start/End: Original strand, 4573290 - 4573457
Alignment:
Q  235 agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 334  Q
    |||||||||||||||||||| ||||||| ||||| ||||   |  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4573290 agtttcaaaattgaactagaagacacttctattcaagtataagatatatagttctgacatcaaagatttttgttgtacaaagaaaataattatgaccact 4573389  T
Q  335 tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4573390 tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac 4573457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 4573130 - 4573267
Alignment:
Q  63 taataataactaacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattc 162  Q
    |||| |||||||||||||||||||||| || ||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4573130 taatcataactaacttataactatcttaaacaatactaaactaatttcaacaaatatgaaactatatctaacacatacttgcatggaattgcaaccattc 4573229  T
Q  163 agtagaaagatattatcaaacaaaatcttcatatgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4573230 agtagaaagatattatcaaacaaaatcttcatatgctt 4573267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 4566133 - 4566253
Alignment:
Q  80 taactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatc 179  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4566133 taactatcttccaaaatattaaactaattttaacaaatctgaaactacatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatc 4566232  T
Q  180 aaacaaaatcttcatatgctt 200  Q
    |||||||||||||||||||||    
T  4566233 aaacaaaatcttcatatgctt 4566253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 423 - 518
Target Start/End: Original strand, 4560209 - 4560304
Alignment:
Q  423 acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaacctttgaattcaaatgctttcaaatcaatctatgcaacaag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4560209 acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaaactttgaattcaaatgctttcaaatcaatctatgcaacaag 4560304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 446 - 515
Target Start/End: Original strand, 4573926 - 4573995
Alignment:
Q  446 tgaatgtttttgaatgttcatagaggaaagaacctttgaattcaaatgctttcaaatcaatctatgcaac 515  Q
    |||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||    
T  4573926 tgaatgtttttgaatgtttaaataagaaagaacctttgaattcaaatgctttcaaatcaatctatgcaac 4573995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 492
Target Start/End: Original strand, 4567935 - 4568001
Alignment:
Q  423 acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaacctttgaattcaaat 492  Q
    |||||||||||||||| |||| |||||||||||||||||||||    ||||||||||||| | |||||||    
T  4567935 acaatttgcatttgcaacatcagtgaatgtttttgaatgttca---cggaaagaacctttaatttcaaat 4568001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 4615168 - 4615237
Alignment:
Q  114 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaaca 184  Q
    |||||| ||||||||||||| | |||| ||||||| ||| |||||||||||| | ||||||| ||||||||    
T  4615168 aaatctcaaactatatctaaaaaatacatgcatggcattccaaccattcagt-ggaagatatcatcaaaca 4615237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 4591385 - 4591438
Alignment:
Q  74 aacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactat 127  Q
    |||||||||||||| | |||||||| ||||||||| |||||||| | |||||||    
T  4591385 aacttataactatcctaaaaaatatgaaactaattctaacaaatatcaaactat 4591438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 16685033 - 16684943
Alignment:
Q  114 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16685033 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagt 16684943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 16684881 - 16684742
Alignment:
Q  243 aattgaactagatgacacttttattctagta--agtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccacttattta 340  Q
    |||||||||||| ||||||| ||||| ||||  ||| ||||| | |||| |||||||| | ||||||||||||||||||||||| ||| |||||||||||    
T  16684881 aattgaactagaagacacttgtattccagtacaagtataagacacttctcacatcaaacacttttgttgtacaaagaaaataattatgtccacttattta 16684782  T
Q  341 ttttataatagtctattggttattattttccatgcttgaa 380  Q
    |||||| ||||||| |||| ||||||||||||||||||||    
T  16684781 ttttatgatagtcttttggctattattttccatgcttgaa 16684742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 37214283 - 37214216
Alignment:
Q  68 ataactaacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaaca 135  Q
    ||||||||||| |||||| ||| || |||||| |||||||| |||||||| | ||||||| |||||||    
T  37214283 ataactaacttttaactaccttaaacaatatccaactaattctaacaaatatcaaactatctctaaca 37214216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University