View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_10 (Length: 518)
Name: NF20983_low_10
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 43463370 - 43462867
Alignment:
| Q |
1 |
atgtaaaaccttatcaaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatatgaagcnnnnnnnn--gggaataga |
98 |
Q |
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| T |
43463370 |
atgtaaaaccttatcaaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatatgaagcaaaaaaaaaagggaataga |
43463271 |
T |
|
| Q |
99 |
aatgaaacaaaacgtaaagatcatgaagataacttaccaccatcaaagggaggtgctccacataagagaaagtatatgatcacacctgcactccacacat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
43463270 |
aatgaaacaaaacgtaaagatcatgaagataacttaccaccatcaaatggaggtgctccacataagaaaaagtatatgatcacacccgcactccacacat |
43463171 |
T |
|
| Q |
199 |
cagcttctggcccataacactctcttataacctcaggtgccatataataaggacttcctaccgcatcactaaatttttctcctgcaaaagaagattgtta |
298 |
Q |
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| T |
43463170 |
cagcttctggcccataacactctcttataacctcaggtgccatataataaggacttcctactgcatcactaaatttttctcctgcaatagaagattgtta |
43463071 |
T |
|
| Q |
299 |
gtcacaaagactatatatgatcattacagtaccaatagtaggtttcaagaaatggttggagattggtataaattggagaaggggattatttccatacctg |
398 |
Q |
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| T |
43463070 |
gtcacaaagactatatattatcattacagtaccaatagtaggtttcaagaaatggttagagattggtataaattggagaaggggattatttccatacctg |
43462971 |
T |
|
| Q |
399 |
gtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatattcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcat |
498 |
Q |
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| T |
43462970 |
gtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatcttcatgtccatcaacaaaaagaaaattttcaggcttaagatcacaatgcat |
43462871 |
T |
|
| Q |
499 |
aact |
502 |
Q |
| |
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|||| |
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| T |
43462870 |
aact |
43462867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 43454654 - 43454318
Alignment:
| Q |
1 |
atgtaaaaccttatcaaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatatgaagcnnnnnnnngggaatagaaa |
100 |
Q |
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||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| ||||| |
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| T |
43454654 |
atgtaaaacctcatcaaatatctctcgatccaattctattaccaaagaacataatcaaaatcctctattattatatgaaacaaaaaaa-gggaaaagaaa |
43454556 |
T |
|
| Q |
101 |
tgaaacaaaacgtaaagatcatgaagataacttaccaccatcaaagggaggtgctccacataagagaaagtatatgatcacacctgcactccacacatca |
200 |
Q |
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| T |
43454555 |
tgaaacaaaaagaaaagatcgtgaagatatcttaccaccataaaagggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatca |
43454456 |
T |
|
| Q |
201 |
gcttctggcccataacactctcttataacctcaggtgccatataataaggacttcctaccgcatcactaaatttttctcctgcaaaagaagattgttagt |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||| | |||||||| |||||| || ||||||||||||||| |||| ||||||||||||||||| |
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| T |
43454455 |
gcttctggcccataacactcttctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaaagaagattgttagt |
43454356 |
T |
|
| Q |
301 |
cacaaagactatatatgatcattacagtaccaatagtaggt |
341 |
Q |
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| T |
43454355 |
aacaaagactatatatgatcattac---accaatagtaggt |
43454318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 349 - 502
Target Start/End: Complemental strand, 43453581 - 43453428
Alignment:
| Q |
349 |
aatggttggagattggtataaattggagaaggggattatttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatat |
448 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||||| |||| | |
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| T |
43453581 |
aatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatct |
43453482 |
T |
|
| Q |
449 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcataact |
502 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43453481 |
tcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataact |
43453428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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