View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_11 (Length: 515)
Name: NF20983_low_11
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_11 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 44799682 - 44799806
Alignment:
| Q |
168 |
ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttc |
267 |
Q |
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| T |
44799682 |
ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttg |
44799781 |
T |
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| Q |
268 |
ataaagttcttcatagaaatttaag |
292 |
Q |
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| T |
44799782 |
ataaagttctgcataggaatttaag |
44799806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 44614647 - 44614593
Alignment:
| Q |
408 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
462 |
Q |
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| T |
44614647 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44614593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 44793922 - 44793976
Alignment:
| Q |
408 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
462 |
Q |
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| T |
44793922 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44793976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8350063 - 8349969
Alignment:
| Q |
1 |
agtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaatttacatctgctactt-atcaagaagagtgtaatcaac |
94 |
Q |
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| T |
8350063 |
agtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgttaatttacatctgctacttaattatcaagagtgtaatcaac |
8349969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 8349622 - 8349563
Alignment:
| Q |
439 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaag |
498 |
Q |
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| T |
8349622 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatatattagctagaaag |
8349563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
| Q |
158 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
203 |
Q |
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| T |
8349669 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
8349624 |
T |
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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8260631 - 8260574
Alignment:
| Q |
1 |
agtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaat |
58 |
Q |
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| T |
8260631 |
agtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaat |
8260574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 8352789 - 8352758
Alignment:
| Q |
1 |
agtttcttatttccctgttaactattatccct |
32 |
Q |
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| T |
8352789 |
agtttcttatttccctgttaactattatccct |
8352758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 11993658 - 11993717
Alignment:
| Q |
426 |
aattgtagaaatgttttagttatacgaatatcaacaatggttgtaaaattgtagaaatat |
485 |
Q |
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| T |
11993658 |
aattgtagaaatgttttagttatacacatatcaacagtggtggtaaaattgtagaaatat |
11993717 |
T |
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Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 27216 - 27253
Alignment:
| Q |
410 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
447 |
Q |
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| T |
27216 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
27253 |
T |
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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 171576 - 171539
Alignment:
| Q |
410 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
447 |
Q |
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| T |
171576 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
171539 |
T |
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