View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_13 (Length: 490)
Name: NF20983_low_13
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 150 - 475
Target Start/End: Complemental strand, 7145533 - 7145198
Alignment:
| Q |
150 |
gaagaaaaatagcaacaaaaagttggcagccataaattatatttgactaatattccgtccatcnnnnnnncttttgccaaggcaaaaggactaaccaccc |
249 |
Q |
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| T |
7145533 |
gaagaaaaatagcaacaaaaagttggcagccataaattatatttgactgatattccgtccatctttttttcttttgccaaggcaaaaggactaaccaccc |
7145434 |
T |
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| Q |
250 |
atcctcttaattaatgaattctcattcatagtataaattatattgagtacagtaattaaaattcaaaagaaaaatggacggtttggttgaagggcccatg |
349 |
Q |
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| T |
7145433 |
atcctcttaattaatgaattctcattcatagtataaattatattgagtgcagtaattaaaattcaaaagaaaaatggacggtttggttgaagtgcccatg |
7145334 |
T |
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| Q |
350 |
tcaacaatgaagggat-------ggattattacatcaagataaaatcctctctctgaaatgagtgtatctcaaaagttactgttattgtttctcagagta |
442 |
Q |
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| T |
7145333 |
tcaacaatgaagggatggatcatggattattacatcgagataaaatcctctctctgaaatgagtgtatctcaaaagttactgttattgtttctcagagta |
7145234 |
T |
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| Q |
443 |
tgtga---attactgaattaattccatgtgtaacct |
475 |
Q |
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| T |
7145233 |
tgtgaattattactgaattaattccatgtgtaacct |
7145198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 7145646 - 7145591
Alignment:
| Q |
9 |
gagatgaaagatagcaaaagaaaatttaatgttgtgtgagccatgaagaaaccact |
64 |
Q |
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| T |
7145646 |
gagatgaaagatagcaaaagaaaatttaatgttgtgtgagccatgaagaaaccact |
7145591 |
T |
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