View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_low_14 (Length: 484)

Name: NF20983_low_14
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_low_14
NF20983_low_14
[»] chr1 (2 HSPs)
chr1 (21-185)||(28927246-28927409)
chr1 (294-362)||(8440035-8440103)
[»] chr3 (1 HSPs)
chr3 (294-436)||(48745315-48745457)
[»] chr4 (4 HSPs)
chr4 (296-367)||(13137275-13137346)
chr4 (300-362)||(26169066-26169128)
chr4 (294-367)||(42527185-42527258)
chr4 (298-365)||(8815548-8815616)
[»] chr8 (1 HSPs)
chr8 (294-366)||(43776414-43776487)
[»] chr5 (2 HSPs)
chr5 (294-347)||(24561309-24561361)
chr5 (296-347)||(24602344-24602394)
[»] chr2 (1 HSPs)
chr2 (294-336)||(38409216-38409258)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 28927409 - 28927246
Alignment:
Q  21 agagatgccaagttatagcaagcaactaccaagtcatggaaagaagatgcaaagtttcgagaagcatttaatgcagcattgaaaccatcttcacatctaa 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28927409 agagatgccaagttagagcaagcaactaccaagtcatggaaagaagatgcaaagttttgagaagcatttaatgcagcattgaaaccatcttcacatctaa 28927310  T
Q  121 ctgatggaccaattgactttttgtttcaaaaactcaccatcaacggaggttaacatcttagatta 185  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  28927309 ctgatggaccaattgactttttgtttc-aaaattcaccatcaacagaggttaacatcttagatta 28927246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 8440035 - 8440103
Alignment:
Q  294 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaac 362  Q
    |||||||||||||||||||||||||| ||||||||  ||||||  ||||| ||||||||||||||||||    
T  8440035 agaggctaaaatgaattatattaccacgacaaaagatcctcctaacacaaaatgtgcgaaggaggaaac 8440103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 294 - 436
Target Start/End: Complemental strand, 48745457 - 48745315
Alignment:
Q  294 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaagaaacgaatccggaatatcagcaata 393  Q
    |||| ||||||||||||||||||||| || |||||| | |||||||| ||||| |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  48745457 agagactaaaatgaattatattaccacgataaaaggtcttcctggcataagatatgcgaaggag-aaacaccaagaaacgaatctggagtatcagcaata 48745359  T
Q  394 tttacagaatttacaaggcaacaacctaaa-cccaccaaaaaca 436  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  48745358 tttacagaatttacaaggaaacaacctaaaccccaccaaaaaca 48745315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 13137346 - 13137275
Alignment:
Q  296 aggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaa 367  Q
    ||||||||||||||||||||||||  |||||||| | |||| |||||||||||||  |||| ||||||||||    
T  13137346 aggctaaaatgaattatattaccacaacaaaaggtcttcctagcacaagatgtgccgaggaagaaacaccaa 13137275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 26169066 - 26169128
Alignment:
Q  300 taaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaac 362  Q
    |||||| || |||||||||| |||||||| ||||||| ||||||| |||||||||||||||||    
T  26169066 taaaataaaatatattaccacgacaaaagaccctcctagcacaagttgtgcgaaggaggaaac 26169128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 42527185 - 42527258
Alignment:
Q  294 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaa 367  Q
    |||||| ||||||||||||||||| |   ||||||||| |||| ||||||| ||||  ||||| ||||||||||    
T  42527185 agaggcaaaaatgaattatattactacatcaaaaggccttcctagcacaaggtgtgtcaaggaagaaacaccaa 42527258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 8815616 - 8815548
Alignment:
Q  298 gctaaaatgaattatattaccatgacaaa-aggccctcctggcacaagatgtgcgaaggaggaaacacc 365  Q
    ||||||||||| ||||||||||| ||||| ||||| |||| |||||||  |||| ||||| ||||||||    
T  8815616 gctaaaatgaaatatattaccataacaaataggccttcctagcacaaggagtgctaaggaagaaacacc 8815548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 43776487 - 43776414
Alignment:
Q  294 agaggctaaaatgaattatattaccatgacaaaa-ggccctcctggcacaagatgtgcgaaggaggaaacacca 366  Q
    ||||||||||||||||||||||||||  |||||| |||| |||| ||||||| ||| | ||||| |||||||||    
T  43776487 agaggctaaaatgaattatattaccacaacaaaatggccttcctagcacaaggtgtactaaggaagaaacacca 43776414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 24561309 - 24561361
Alignment:
Q  294 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatg 347  Q
    ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||    
T  24561309 agaggcttaaatgaattatattaccacgac-aaagaccctcctggcacaagatg 24561361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 24602344 - 24602394
Alignment:
Q  296 aggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatg 347  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||||||||||||    
T  24602344 aggcttaaatgaattatattaccacgac-aaagaccctcctggcacaagatg 24602394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 38409258 - 38409216
Alignment:
Q  294 agaggctaaaatgaattatattaccatgacaaaaggccctcct 336  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  38409258 agaggctaaaatgaattatattaccacaacaaaaggccttcct 38409216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University