View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_low_16 (Length: 482)

Name: NF20983_low_16
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_low_16
NF20983_low_16
[»] chr3 (6 HSPs)
chr3 (350-467)||(24422829-24422942)
chr3 (350-467)||(24411103-24411216)
chr3 (139-230)||(24410974-24411064)
chr3 (139-230)||(24422981-24423071)
chr3 (26-74)||(24410920-24410968)
chr3 (26-74)||(24423077-24423125)
[»] chr5 (5 HSPs)
chr5 (230-296)||(6522156-6522222)
chr5 (244-296)||(10842620-10842672)
chr5 (231-269)||(13992459-13992497)
chr5 (246-296)||(38048867-38048917)
chr5 (230-310)||(38779446-38779526)
[»] chr1 (3 HSPs)
chr1 (230-302)||(34372459-34372531)
chr1 (230-327)||(31280507-31280604)
chr1 (230-267)||(28027049-28027086)
[»] chr7 (2 HSPs)
chr7 (248-316)||(34412154-34412222)
chr7 (246-296)||(26759956-26760006)
[»] chr4 (4 HSPs)
chr4 (230-296)||(23033489-23033554)
chr4 (244-296)||(2888811-2888862)
chr4 (244-296)||(4368798-4368849)
chr4 (229-269)||(29262563-29262603)
[»] chr8 (2 HSPs)
chr8 (85-160)||(4920135-4920208)
chr8 (241-269)||(11822285-11822313)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 350 - 467
Target Start/End: Complemental strand, 24422942 - 24422829
Alignment:
Q  350 aaatcagcttgggggaagacattaaaacttctagaaattaggcctttgagttcctattaattaggataaagtgacataaaccaaatgaaattccattcaa 449  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  24422942 aaatcagcttggggggagaccttaaaagttcgagaaattaggccattgagttcctattaattag----aagtgacataaaccaaatgaaattccattcaa 24422847  T
Q  450 tcactttgaagttaatct 467  Q
    ||||||||||||||||||    
T  24422846 tcactttgaagttaatct 24422829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 350 - 467
Target Start/End: Original strand, 24411103 - 24411216
Alignment:
Q  350 aaatcagcttgggggaagacattaaaacttctagaaattaggcctttgagttcctattaattaggataaagtgacataaaccaaatgaaattccattcaa 449  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  24411103 aaatcagcttggggggagaccttaaaagttcgagaaattaggccattgagttcctattaattag----aagtgacataaaccaaatgaaattccattcaa 24411198  T
Q  450 tcactttgaagttaatct 467  Q
    ||||||||||| ||||||    
T  24411199 tcactttgaaggtaatct 24411216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 24410974 - 24411064
Alignment:
Q  139 ccgaactgcataaacaaacgatggtattccattgtttacgacttgtgtttatttattcnnnnnnnactagttgttgatctaacacgaaagac 230  Q
    ||||||| | ||||||||||||||| |||||||||||||||||| ||||| | |||||       |||||||||||||||||||||| ||||    
T  24410974 ccgaacttcgtaaacaaacgatggtgttccattgtttacgactt-tgtttgtctattcttcttttactagttgttgatctaacacgatagac 24411064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 24423071 - 24422981
Alignment:
Q  139 ccgaactgcataaacaaacgatggtattccattgtttacgacttgtgtttatttattcnnnnnnnactagttgttgatctaacacgaaagac 230  Q
    ||||||| | ||||||||||||||| |||||||||||||||||| ||||| | |||||       |||||||||||||||||||||| ||||    
T  24423071 ccgaactacgtaaacaaacgatggtgttccattgtttacgactt-tgtttgtctattcttcttttactagttgttgatctaacacgatagac 24422981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 24410920 - 24410968
Alignment:
Q  26 agggcaatgggcggagagctaagctcatatagcgttgcgaataaacata 74  Q
    |||||||||| ||||||||||||||   |||||||||||||||||||||    
T  24410920 agggcaatggacggagagctaagctagcatagcgttgcgaataaacata 24410968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24423125 - 24423077
Alignment:
Q  26 agggcaatgggcggagagctaagctcatatagcgttgcgaataaacata 74  Q
    |||||||||| ||||||||||||||   |||||||||||||||||||||    
T  24423125 agggcaatggacggagagctaagctagcatagcgttgcgaataaacata 24423077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 6522222 - 6522156
Alignment:
Q  230 cttgtaaactgaaacgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||| | || ||||||||||||    
T  6522222 cttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataataga 6522156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 10842672 - 10842620
Alignment:
Q  244 cgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    |||||||||||||||||| ||||||| |||||||| | |||||||||||||||    
T  10842672 cgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaataataga 10842620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 13992497 - 13992459
Alignment:
Q  231 ttgtaaactgaaacgtagtatttaaacacaagttgtaat 269  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  13992497 ttgtaaactgaacggtagtatttaaacacaagttgtaat 13992459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 38048867 - 38048917
Alignment:
Q  246 tagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    |||||||||||||||||||||||| ||||||   ||| |||||||||||||    
T  38048867 tagtatttaaacacaagttgtaatctgtaaactcttaacttgaataataga 38048917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 38779446 - 38779526
Alignment:
Q  230 cttgtaaactgaaacgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataatagatgggtattgcagcc 310  Q
    ||||||||||| |  ||||||||||||||||||||||| | || ||| | | ||||||| |||||||  ||||||| ||||    
T  38779446 cttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggtattgaagcc 38779526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 34372531 - 34372459
Alignment:
Q  230 cttgtaaactgaaacgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataatagatgggta 302  Q
    ||||||||||| | ||||||||||||| |||||||||| |||||||| | | ||||||||||||||| |||||    
T  34372531 cttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggta 34372459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 31280507 - 31280604
Alignment:
Q  230 cttgtaaactgaaacgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataatagatgggtattgcagccgctatggagttagagac 327  Q
    |||||||| || | |||| ||||||||||||||||| |||||||||| | | |||||| ||||||||  ||||||| ||| |||||| |||| |||||    
T  31280507 cttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattgtagctgctatgtagttggagac 31280604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 28027086 - 28027049
Alignment:
Q  230 cttgtaaactgaaacgtagtatttaaacacaagttgta 267  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28027086 cttgtaaactgaaccgtagtatttaaacacaagttgta 28027049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 34412222 - 34412154
Alignment:
Q  248 gtatttaaacacaagttgtaatttgtaaatcattagcttgaataatagatgggtattgcagccgctatg 316  Q
    |||||||||||||| ||||||| |||||| | | |||||||||||||||  |||||||||| |||||||    
T  34412222 gtatttaaacacaaattgtaatctgtaaaccctaagcttgaataatagaaaggtattgcagtcgctatg 34412154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 26759956 - 26760006
Alignment:
Q  246 tagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    |||||||||||||| |||| ||||||||||||||| | |||||||||||||    
T  26759956 tagtatttaaacacgagttataatttgtaaatcataaacttgaataataga 26760006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 23033554 - 23033489
Alignment:
Q  230 cttgtaaactgaaacgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||| |||| | | |||||||||||||    
T  23033554 cttgtaaagtgaaccgtagtaattaaacacaagttgcaatttgt-aatcctaaacttgaataataga 23033489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 2888862 - 2888811
Alignment:
Q  244 cgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    |||| ||||||||||||||||||||| ||||| || | |||||||||||||||    
T  2888862 cgtattatttaaacacaagttgtaatctgtaactc-taagcttgaataataga 2888811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 4368849 - 4368798
Alignment:
Q  244 cgtagtatttaaacacaagttgtaatttgtaaatcattagcttgaataataga 296  Q
    |||||||||||||||||||||||| ||||||  || | |||||||||||||||    
T  4368849 cgtagtatttaaacacaagttgtactttgtacctc-taagcttgaataataga 4368798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 29262603 - 29262563
Alignment:
Q  229 acttgtaaactgaaacgtagtatttaaacacaagttgtaat 269  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  29262603 acttgtaaactgaaccgtagttttgaaacacaagttgtaat 29262563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 4920208 - 4920135
Alignment:
Q  85 gtaatatacgaaactatatctgttttgtagtcgtagaggtaggcacacatttgaccgaactgcataaacaaacgat 160  Q
    ||||||||| ||| |||| ||| | | |||||||||||||||||| |   ||||||||||||||||||||| ||||    
T  4920208 gtaatatacaaaagtatagctgctctatagtcgtagaggtaggcataa--ttgaccgaactgcataaacaaccgat 4920135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 11822285 - 11822313
Alignment:
Q  241 aaacgtagtatttaaacacaagttgtaat 269  Q
    |||||||||||||||||||||||||||||    
T  11822285 aaacgtagtatttaaacacaagttgtaat 11822313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University