View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_17 (Length: 477)
Name: NF20983_low_17
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Original strand, 30693118 - 30693566
Alignment:
| Q |
17 |
ttaagaagggttgtatgttttagttttgcaattaattgaggaagtgatatcaggtttttagtctttaaagttatatgagaatgttatgttatgggtggtc |
116 |
Q |
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| T |
30693118 |
ttaagaagggttatatgttttagttttgcaattaattgaggaagttatatcaggtttttagtctttaaagttatatgagaatgttatgttatgggtggtc |
30693217 |
T |
|
| Q |
117 |
agtcagttagattttgttttataaaatcatgcaaaggaaaggttttctacttaggctgccatcttagctcgtggtcttgagggtactggagaatgacaca |
216 |
Q |
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| T |
30693218 |
agtcagttagattttgttttataaaatcatgcaaaggaaaggttttctacttaggctgccatcttagctcgtggtcttgagggtactggagaatgacaca |
30693317 |
T |
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| Q |
217 |
aagacatcctgtattctcatttcttttaatcctattcatacttgtaccataaaattcaacagcttccatttggttctctagctccttaagtataaggtga |
316 |
Q |
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| T |
30693318 |
aagacatcccgtattctcatttcttttaatcctattcatacttattccataaacttcaacagcttccatttggttctctagctccttaagtataaggtga |
30693417 |
T |
|
| Q |
317 |
tcttatcagtcatgaagtgactggtccnnnnnnncagttttatttctatggtgtatttggtttggataagaatgtctacattgattattatcaagcatgt |
416 |
Q |
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| T |
30693418 |
tcttatcagtcatgaagtgactggtcccttttttcagttttatttctatggtgtatttggtttggataagaatgtctacattgattattatcaagcatgt |
30693517 |
T |
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| Q |
417 |
ctctttgcacttgcactttttgtgatggcattgagtttatggtctctct |
465 |
Q |
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| T |
30693518 |
ctctttgcacttgcactttttgtgatggcattgagtttatggtctctct |
30693566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 28493250 - 28493408
Alignment:
| Q |
19 |
aagaagggttgtatgttttagttttgcaattaattgaggaagtgatatcaggtttttagtctttaaagtt-atatgagaatgttatgttatgggtggtca |
117 |
Q |
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|||||||| | ||||||||||||||||||||||||||| |||| |||||| |||||| || |||||||| || ||||||||||||||||||| ||||| |
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| T |
28493250 |
aagaagggctatatgttttagttttgcaattaattgagcaagtaatatcaagtttttggttattaaagttaatttgagaatgttatgttatggatggtcg |
28493349 |
T |
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| Q |
118 |
gtcagttagattttgtttt-ataaaatcatgcaaaggaaaggttttctacttaggctgc |
175 |
Q |
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| T |
28493350 |
gtcagttggattttgttttgataaaatcatgcaaaggaaaggtcttctatttaggctgc |
28493408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 28493518 - 28493642
Alignment:
| Q |
219 |
gacatcctgtattctcatttcttttaatcctattcatacttgtaccataaaattcaacagcttccatttggttctctagctccttaagtata---aggtg |
315 |
Q |
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||||||| |||||| |||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||| || ||||||||||| || || ||||| |
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| T |
28493518 |
gacatcccgtattcccatttcttttaatcctattcatacctgtaccataaatttcagcagtttccatttggatccctagctccttaggtgtaaggaggtg |
28493617 |
T |
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| Q |
316 |
atcttat--cagtcatgaagtgact |
338 |
Q |
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||||||| |||||||||| ||||| |
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| T |
28493618 |
atcttatcacagtcatgaattgact |
28493642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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