View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_low_18 (Length: 476)

Name: NF20983_low_18
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_low_18
NF20983_low_18
[»] chr6 (10 HSPs)
chr6 (331-456)||(5351747-5351872)
chr6 (348-461)||(5135751-5135872)
chr6 (377-461)||(5439395-5439479)
chr6 (348-461)||(5100650-5100771)
chr6 (411-458)||(5352691-5352738)
chr6 (281-345)||(5352615-5352677)
chr6 (331-370)||(5255890-5255930)
chr6 (331-362)||(5334562-5334593)
chr6 (420-461)||(5180644-5180685)
chr6 (432-461)||(5448993-5449022)
[»] scaffold1476 (1 HSPs)
scaffold1476 (386-425)||(189-228)
[»] chr3 (4 HSPs)
chr3 (331-370)||(47985137-47985177)
chr3 (331-370)||(47994424-47994464)
chr3 (331-370)||(48003711-48003751)
chr3 (331-370)||(48012996-48013036)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 456
Target Start/End: Complemental strand, 5351872 - 5351747
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctttcattcaat 429  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||| ||||| |||||||| || |     
T  5351872 taaaatcaagaaactacagccaaaaatggaaaacaattgttagccgtcaccataa-aattgatttttgctccgccattgctttactatctttcaatccac 5351774  T
Q  430 tcgatttttcttctttctgttctgatt 456  Q
    ||  |||||||||||||||||||||||    
T  5351773 tcagtttttcttctttctgttctgatt 5351747  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 5135751 - 5135872
Alignment:
Q  348 agccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatct--------ttcattcaattcgattttt 438  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||||        ||||||| | ||| |||||    
T  5135751 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgctttactatcttccattgattcattccactcggttttt 5135849  T
Q  439 cttctttctgttctgattgaagt 461  Q
    |||||||||||||||||||||||    
T  5135850 cttctttctgttctgattgaagt 5135872  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 5439479 - 5439395
Alignment:
Q  377 caccataagaattgatttttgctcggccattgttttacaatctttcattcaattcgatttttcttctttctgttctgattgaagt 461  Q
    |||||||||||||||| ||| |   ||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||    
T  5439479 caccataagaattgatgtttaccaagccattgttttaccatttttcattccattcgatttttcttctttctgttccgattgaagt 5439395  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 5100650 - 5100771
Alignment:
Q  348 agccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatct--------ttcattcaattcgattttt 438  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||  |||| ||||        ||||||| | ||| |||||    
T  5100650 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgcattactatctttcattgattcattccactcggttttt 5100748  T
Q  439 cttctttctgttctgattgaagt 461  Q
    |||||||||||||||||||||||    
T  5100749 cttctttctgttctgattgaagt 5100771  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 5352691 - 5352738
Alignment:
Q  411 ttacaatctttcattcaattcgatttttcttctttctgttctgattga 458  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  5352691 ttaccatctttcattccattcgatttttcttctttctgttctgattga 5352738  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 5352615 - 5352677
Alignment:
Q  281 aaaaactgtaatctcgcttctcattaggattgaaataaaatcaccacagttaaaatctagaaact 345  Q
    ||||| |||||||||||||||| | |||||||||  |||| |||||||| |||||||||||||||    
T  5352615 aaaaattgtaatctcgcttctcttaaggattgaa--aaaaccaccacagataaaatctagaaact 5352677  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 5255890 - 5255930
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 370  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  5255890 taaaatctagaaacttcagccaaaaatggaaaacaattgtt 5255930  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 362
Target Start/End: Complemental strand, 5334593 - 5334562
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatggaaa 362  Q
    ||||||||||||||||||||||||||||||||    
T  5334593 taaaatctagaaacttcagccaaaaatggaaa 5334562  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 5180644 - 5180685
Alignment:
Q  420 ttcattcaattcgatttttcttctttctgttctgattgaagt 461  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  5180644 ttcattccactcggtttttcttctttctgttctgattgaagt 5180685  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 5449022 - 5448993
Alignment:
Q  432 gatttttcttctttctgttctgattgaagt 461  Q
    ||||||||||||||||||||||||||||||    
T  5449022 gatttttcttctttctgttctgattgaagt 5448993  T

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Target: scaffold1476 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 228 - 189
Alignment:
Q  386 aattgatttttgctcggccattgttttacaatctttcatt 425  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttcatt 189  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 47985137 - 47985177
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 370  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  47985137 taaaatctagaaacttcagccaaaattggaaaacaattgtt 47985177  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 47994424 - 47994464
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 370  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  47994424 taaaatctagaaacttcagccaaaattggaaaacaattgtt 47994464  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 48003711 - 48003751
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 370  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  48003711 taaaatctagaaacttcagccaaaattggaaaacaattgtt 48003751  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 48012996 - 48013036
Alignment:
Q  331 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 370  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  48012996 taaaatctagaaacttcagccaaaattggaaaacaattgtt 48013036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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