View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_21 (Length: 427)
Name: NF20983_low_21
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_21 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 159 - 427
Target Start/End: Complemental strand, 41381229 - 41380961
Alignment:
| Q |
159 |
cctacccttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaatt |
258 |
Q |
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| T |
41381229 |
cctacccttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaatt |
41381130 |
T |
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| Q |
259 |
gaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41381129 |
gaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacg |
41381030 |
T |
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| Q |
359 |
aatgatgtattttcttttggttttatgtgtttgcattgnnnnnnnncagcattaacaatgttcttagcc |
427 |
Q |
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| T |
41381029 |
aatgatgtattttcttttggttttatgtgtttgcattgttttttttcagcattaacaatgttcttagcc |
41380961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 41380565 - 41380733
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatatatggagcaaatattaa |
100 |
Q |
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| T |
41380565 |
ggcttcaaggataatactcctcaatgctccaatgggtgctagaatcattatacataccccaagaacaatacatatctgtaatatatggagcaaatattaa |
41380664 |
T |
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| Q |
101 |
acatgtgctta----taacattattnnnnnnncttagagaaaaaatgcaataattaaagatacctaccc |
165 |
Q |
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| T |
41380665 |
acatgtgcttaattataacattattaaaaaaacttagagaaaaaatgcaataattaaagatacctaccc |
41380733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 166 - 350
Target Start/End: Original strand, 8042935 - 8043119
Alignment:
| Q |
166 |
ttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttc |
265 |
Q |
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||||||| ||||||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| |
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| T |
8042935 |
ttataattttaatttcatattttgattgttgatgtaggtttttgcgatgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttc |
8043034 |
T |
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| Q |
266 |
aaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa |
350 |
Q |
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| T |
8043035 |
aaatcaagtaaaatgcttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa |
8043119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 175 - 350
Target Start/End: Complemental strand, 7970765 - 7970590
Alignment:
| Q |
175 |
taatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagt |
274 |
Q |
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|||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
7970765 |
taatttgatattttgattgttggtgtaggtttttgcaatgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttcaaatcaagt |
7970666 |
T |
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| Q |
275 |
aaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa |
350 |
Q |
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| T |
7970665 |
aaaatgcttcgttttattgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa |
7970590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7970127 - 7970245
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatatatggagcaaatattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970127 |
ggcttcaagtataatactcctcaatgctccaatgggtgctaaaatcattatgcataccccaagaacaatacatatctgtaatatatggagcaaatattaa |
7970226 |
T |
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| Q |
101 |
acatgtgcttataacatta |
119 |
Q |
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| T |
7970227 |
acatgtgcttataacatta |
7970245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8043582 - 8043469
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatatatggagcaaatattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
8043582 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaaccattatacataccccaagaacaacacatatctgtaacatatggagcaaatattaa |
8043483 |
T |
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| Q |
101 |
acatgtgcttataa |
114 |
Q |
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|||||||||||||| |
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| T |
8043482 |
acatgtgcttataa |
8043469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 8032956 - 8033118
Alignment:
| Q |
165 |
cttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaattt |
264 |
Q |
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|||| ||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||| | |||||| | || |||||| ||||||||||||| |
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| T |
8032956 |
cttacaattttaatttcatattttggtttttgttgtagatttttgcaatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaattt |
8033052 |
T |
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| Q |
265 |
caaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagt |
330 |
Q |
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|||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||| |
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| T |
8033053 |
caaaccaagtaaaatcctccgttttgttgcgcgtaactcatacgtgggtaagtgaaataaaatagt |
8033118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8033646 - 8033566
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaa |
81 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||| |||||||| ||||||||| |
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| T |
8033646 |
ggcttcaagtataatactcctcaatgctccaatgggtgccaaaatcattatacataagccaataacaatacttatctgtaa |
8033566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 316
Target Start/End: Complemental strand, 2149 - 2001
Alignment:
| Q |
165 |
cttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaattt |
264 |
Q |
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|||| ||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||| | |||||| | || |||||| ||||||||||||| |
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| T |
2149 |
cttacaattttaatttcatattttggtttttgttgtagatttttgcaatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaattt |
2053 |
T |
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| Q |
265 |
caaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaag |
316 |
Q |
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|||| ||||| ||||| || |||||||||||||| |||||||||||||| |
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| T |
2052 |
caaaccaagtgccatcctacgctttgttgtgcgtaacatatacgtgggtaag |
2001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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