View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20983_low_23 (Length: 417)
Name: NF20983_low_23
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_23 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 41380565 - 41380985
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatatatggagcaaatattaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41380565 |
ggcttcaaggataatactcctcaatgctccaatgggtgctagaatcattatacataccccaagaacaatacatatctgtaatatatggagcaaatattaa |
41380664 |
T |
|
| Q |
101 |
acatgtgctta----taacattattnnnnnnncttagagaaaaaatgcaataattaaagatacctacccaattaatccaccaagacaagctgaatctctt |
196 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41380665 |
acatgtgcttaattataacattattaaaaaaacttagagaaaaaatgcaataattaaagatacctacccaattaatccaccaagacaagctgaatctctt |
41380764 |
T |
|
| Q |
197 |
tggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaagattatgattatctaagaaaatttagtaatta |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41380765 |
tggattgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaagatgagtaagattatgattatctaagaaaatttagtaatta |
41380864 |
T |
|
| Q |
297 |
tgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggct |
396 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41380865 |
tatttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggct |
41380964 |
T |
|
| Q |
397 |
aagaacattgttaatgctgaa |
417 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41380965 |
aagaacattgttaatgctgaa |
41380985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 43855252 - 43855151
Alignment:
| Q |
316 |
cttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
415 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||| ||||||||||| ||| | | |||||||| ||||||| |
|
|
| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgggaaggttatgcccacaaacattgtgaatgctg |
43855153 |
T |
|
| Q |
416 |
aa |
417 |
Q |
| |
|
|| |
|
|
| T |
43855152 |
aa |
43855151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 43856685 - 43856729
Alignment:
| Q |
315 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaa |
359 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
43856685 |
gcttacaaagtatgtcattggagcaaaaacaaatcctccaaaaaa |
43856729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 7970127 - 7970556
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatatatggagcaaatattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970127 |
ggcttcaagtataatactcctcaatgctccaatgggtgctaaaatcattatgcataccccaagaacaatacatatctgtaatatatggagcaaatattaa |
7970226 |
T |
|
| Q |
101 |
acatgtgcttataacattattnnnnnnn-------cttagagaaaaaa----tgcaataattaaagatacctacccaattaatccaccaagacaagctga |
189 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7970227 |
acatgtgcttataacattaataaattattcaagaacttaaagaaaaaaaaaatacaataattaaagatacctacccaattaatccaccaagataagctga |
7970326 |
T |
|
| Q |
190 |
atctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaagattatgattat-ctaagaaaattt |
288 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||||||||||| |
|
|
| T |
7970327 |
atctttttggtttgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaagttaagcaagattatgattatcctaagaaaattt |
7970426 |
T |
|
| Q |
289 |
agtaattatgtttacaa-tttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaag |
387 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
7970427 |
agtaattatatttacaattttctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcctaagaggccaccgaaaaatgggaag |
7970526 |
T |
|
| Q |
388 |
gtaatggctaagaacattgttaatgctgaa |
417 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |
|
|
| T |
7970527 |
gtaatggcaatgaacattgttaatgctgaa |
7970556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 8043582 - 8043153
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatatatggagcaaatattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
8043582 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaaccattatacataccccaagaacaacacatatctgtaacatatggagcaaatattaa |
8043483 |
T |
|
| Q |
101 |
acatgtgcttataa-cattattnnnnnnn-------cttagagaa----aaaatgcaataattaaagatacctacccaattaatccaccaagacaagctg |
188 |
Q |
| |
|
|||||||||||||| ||||| | |||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8043482 |
acatgtgcttataaacattaataaattattcaagaacttaaagaagaaaaaaatacaataattaaagatgcctacccaattaatccaccaagacaagctg |
8043383 |
T |
|
| Q |
189 |
aatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaagattatgattat-ctaagaaaatt |
287 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | || |||||||||||||| ||||||||||| |
|
|
| T |
8043382 |
aatctctttggtttgtagagtttaagccacacaatacatggaagctgaaaatttaatagaatgaaaagttaagcaagattatgattatcctaagaaaatt |
8043283 |
T |
|
| Q |
288 |
tagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaag |
387 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
8043282 |
tagtaattacatttacaatttctcatggcttacataatatgttgctggagcaaaagcaaatcctccaaaaaatcctaagaggccaccgaaaaatgggaag |
8043183 |
T |
|
| Q |
388 |
gtaatggctaagaacattgttaatgctgaa |
417 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |
|
|
| T |
8043182 |
gtaatggcaatgaacattgttaatgctgaa |
8043153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 8033646 - 8033217
Alignment:
| Q |
1 |
ggcttcaagtataatactcctcaatgctccaatgggtgctagaatcattatactaaccccaagaacaatacatatctgtaatata-tggagcaaata--t |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||| |||||||| ||||||||| | | | ||||||| | | |
|
|
| T |
8033646 |
ggcttcaagtataatactcctcaatgctccaatgggtgccaaaatcattatacataagccaataacaatacttatctgtaacaaaatagagcaaagaaat |
8033547 |
T |
|
| Q |
98 |
taaacatgtgcttataacattattnnnnnnnct----------tagagaaaaaatgcaataattaaagatacctacccaattaatccaccaagacaagct |
187 |
Q |
| |
|
||||||||||| ||||||| ||| | ||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
8033546 |
taaacatgtgcatataacaatataaattatattataaagttgatagagaaaacaaacaataattaaagatacctacccaattagtccaccaagagaagct |
8033447 |
T |
|
| Q |
188 |
gaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaagatgagtaagattatgattatc-taagaaaat |
286 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||||||||||||||||||| | || || |||||||||||||| || |||||||| ||| ||||||||| |
|
|
| T |
8033446 |
gaatctctttggtttgtaaaggattagccacatgatacatggaagctgaaa-tgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaat |
8033348 |
T |
|
| Q |
287 |
ttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaa |
386 |
Q |
| |
|
||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
8033347 |
ccagtgattatatttacaatttttcatggcttacaaaatatgttgttggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaa |
8033248 |
T |
|
| Q |
387 |
ggtaatggctaagaacattgttaatgctgaa |
417 |
Q |
| |
|
||||| || | ||||||||| ||||||||| |
|
|
| T |
8033247 |
tgtaatagcaatgaacattgtgaatgctgaa |
8033217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 7977223 - 7977328
Alignment:
| Q |
312 |
atggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaat |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| || || |||||| | ||||||||||| ||||| || | ||||||||| ||| |
|
|
| T |
7977223 |
atggcttacaaagtatgttgttggagcaaaagcaaaccctccaaaaaaccctagaaggccatcgaaaaatgggaatgtaatagcaatgaacattgtgaat |
7977322 |
T |
|
| Q |
412 |
gctgaa |
417 |
Q |
| |
|
|||||| |
|
|
| T |
7977323 |
gctgaa |
7977328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 7976908 - 7976993
Alignment:
| Q |
156 |
atacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatt |
241 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| |||| | |||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
7976908 |
atacatacccaattagcccaccatgacaagccgaattttcttggtttgtagattgaaagccacatgatacatggaagctgaaaatt |
7976993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 14197281 - 14197346
Alignment:
| Q |
315 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaa |
380 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
14197281 |
gcttacaaagtatgttgttggagcaaaagcaaatccaccaaaaaatcctagtagaccaccgaaaaa |
14197346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 14197141 - 14197211
Alignment:
| Q |
173 |
ccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaattta |
243 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||| || ||||| ||||||||||||| |
|
|
| T |
14197141 |
ccaccaagacaagctgaatctccttggtttgtagattgcaagccacattatgcatggtagctgaaaattta |
14197211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 34410630 - 34410575
Alignment:
| Q |
176 |
ccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaa |
231 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
34410630 |
ccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgatacatggaa |
34410575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University