View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_26 (Length: 379)
Name: NF20983_low_26
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 28009530 - 28009623
Alignment:
| Q |
19 |
gaacacagcagagatgcttaatgctgctgctaattatgtcatgtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaag |
112 |
Q |
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| T |
28009530 |
gaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaag |
28009623 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 28009627 - 28009664
Alignment:
| Q |
132 |
attgctgcaaagttcttatattattagagctcataatt |
169 |
Q |
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| T |
28009627 |
attgttgcaatgttcttatattattagagctcataatt |
28009664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26427351 - 26427258
Alignment:
| Q |
19 |
gaacacagcagagatgcttaatgctgctgctaattatgtcatgtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaag |
112 |
Q |
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| T |
26427351 |
gaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaag |
26427258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 308 - 372
Target Start/End: Complemental strand, 26427070 - 26427006
Alignment:
| Q |
308 |
aatacctagggtttgtttgttcattgcatatatatgtggttactttgtgtgaagaccctttgctt |
372 |
Q |
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| T |
26427070 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
26427006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 26427225 - 26427147
Alignment:
| Q |
144 |
ttcttatattattagagctcataattgaatttaatttacttgttgtgtgtccttaattagggcttatgtaacactccaagtgaat |
228 |
Q |
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| T |
26427225 |
ttcttatattattagagctcatagttgaatttaatt-acttgttttgtgttctta----ggtcttat-taacactccaagtgaat |
26427147 |
T |
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