View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_27 (Length: 369)
Name: NF20983_low_27
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 33411970 - 33411605
Alignment:
| Q |
1 |
tatttgtatgctat---tttcatctcattagatatttatattgacttagattgtatatagtcatttatatgcaattagatgatatgtggttttttattca |
97 |
Q |
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| T |
33411970 |
tatttgtatgctatatttttcatctcattagatatttatattgacttagattgcatatagtcatttataagcaattagatgatatgtggctttttaatca |
33411871 |
T |
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| Q |
98 |
agatcgaacaatcaagatctcaattaaatttttattttctataaaatcaaaactactgattaagcttgagaacttgata----tatacgagcctccttaa |
193 |
Q |
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| T |
33411870 |
agatcgaacaatcaagatctcaattaaatttttattttctataaaatcaaaactactaattaagcttgagaacttgatatatatatacgagcctcctcaa |
33411771 |
T |
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| Q |
194 |
gtatatttgtactccaagtgtcaatactcgattacataactaagatcccaaatnnnnnnnctcgtaagaatcaaaacattatttatgtgtaaactttcta |
293 |
Q |
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| T |
33411770 |
gtatatttgtactccaagtgtcaatactcgattacataactaagatcccaaataaaaaaactcgtaagaatcaaaacattatttatgtgtaaactttcta |
33411671 |
T |
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| Q |
294 |
catggagacaactcaatcataacaaaggccggaagagcaactatatactttttctatttccctttg |
359 |
Q |
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| T |
33411670 |
catggagacaactcaatcataacgaaggccggaagaacaactatatactttttctatttccctttg |
33411605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 157 - 359
Target Start/End: Complemental strand, 33425514 - 33425313
Alignment:
| Q |
157 |
ttaagcttgagaacttgatatatacgagcctccttaagtatatttgtactccaagtgtcaatactcgattacataactaagatcccaaatnnnnnnnctc |
256 |
Q |
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| T |
33425514 |
ttaagcttgagaacttgatatattcgagactcctcaagtat--ttgtactccaagtgtcaatactcgattacatctctaattttccaaataaagaaactc |
33425417 |
T |
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| Q |
257 |
gtaagaatcaaaacattatttatgtgtaaactttctacatggagacaactcaatcataacaaaggccggaagagcaac--tatatactttttctatttcc |
354 |
Q |
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| T |
33425416 |
gtaagaaacaaa-cattatttatgtgtaaactttctgcatggagacaactcaattataacgaagcccggaagaggaactatatatactgtttctatttcc |
33425318 |
T |
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| Q |
355 |
ctttg |
359 |
Q |
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||||| |
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| T |
33425317 |
ctttg |
33425313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 33417363 - 33417275
Alignment:
| Q |
107 |
aatcaagatctcaattaaatttttattttctataaaatcaaaactactgattaagcttgagaacttgatatatacgagcctccttaagtat |
197 |
Q |
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| T |
33417363 |
aatcaagatcttaaacaattttttattttctataaaatcaaaactactaattaagcttgagtacttg--atattcgagcctcctcaagtat |
33417275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 33417268 - 33417206
Alignment:
| Q |
295 |
atggagacaactcaatcataacaaaggccggaagagcaactatatactttttctatttccctttg |
359 |
Q |
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|||||||||||||||| |||| ||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
33417268 |
atggagacaactcaattataatgaaggccggaggaggaac--tatactttttctatttccctttg |
33417206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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