View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_low_3 (Length: 611)

Name: NF20983_low_3
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_low_3
NF20983_low_3
[»] chr4 (5 HSPs)
chr4 (16-594)||(49495542-49496125)
chr4 (31-96)||(10184879-10184944)
chr4 (31-96)||(43189852-43189917)
chr4 (31-79)||(45577797-45577845)
chr4 (33-90)||(53200740-53200797)
[»] chr3 (4 HSPs)
chr3 (39-96)||(42035769-42035826)
chr3 (46-97)||(28625009-28625060)
chr3 (31-79)||(42547471-42547519)
chr3 (31-96)||(22484834-22484899)
[»] chr6 (4 HSPs)
chr6 (28-79)||(35004281-35004332)
chr6 (31-96)||(31870236-31870301)
chr6 (42-96)||(18597294-18597348)
chr6 (31-79)||(32859979-32860027)
[»] chr1 (6 HSPs)
chr1 (33-89)||(34283997-34284053)
chr1 (33-76)||(33937101-33937144)
chr1 (40-82)||(32215409-32215451)
chr1 (31-96)||(38663069-38663134)
chr1 (45-93)||(24173141-24173189)
chr1 (52-96)||(43678077-43678121)
[»] chr8 (1 HSPs)
chr8 (31-96)||(16485921-16485986)
[»] chr7 (4 HSPs)
chr7 (31-96)||(29455944-29456009)
chr7 (41-96)||(1363579-1363634)
chr7 (46-96)||(8083830-8083880)
chr7 (46-90)||(15035357-15035401)
[»] scaffold0650 (1 HSPs)
scaffold0650 (46-96)||(1746-1796)
[»] chr5 (2 HSPs)
chr5 (34-76)||(26180417-26180459)
chr5 (31-96)||(4689801-4689866)
[»] chr2 (1 HSPs)
chr2 (31-79)||(16062190-16062238)


Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 594
Target Start/End: Original strand, 49495542 - 49496125
Alignment:
Q  16 attctcgtttgaaataacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttataaacttgtacgtcctgtcac 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  49495542 attctcgtttggaataacacaatataaggtagaacaacacataacaaacttttatgatattgaacaattttttatcttataaacttgtacgtcctgtcac 49495641  T
Q  116 gttctttattttttaacaaatgaaacacatcctaagaaacaattattgaaacacgaccaataataaaaccacgactgccaagaatcttgaaagataagtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  49495642 gttctttattttttaacaaatgaaacacatcctaagaaacaattattgaaacacgac---taataaaaccacgactgccaagaatcttgaaagataagtt 49495738  T
Q  216 ttgcttttcttagaattgtttttatcaaagcttattctacattatctnnnnnnnnnn-ttgttctagattaggct------ttaataactatcaattcta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||      |||| ||||||||||||||    
T  49495739 ttgcttttcttagaattgtttttatcaaagcttattctacattatctaaaaaaaaaaattgttctagattaggctacaatcttaacaactatcaattcta 49495838  T
Q  309 cgtcctctnnnnnnnnnnnncaatcaattctatcttaaattttttgacagcttcatcaaatttccaatttcttatgaagcggttctgttattttcccatt 408  Q
    ||||||||            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49495839 cgtcctctaaaaaaaaaaaacaatcaattctatcttaaattttttgatagcttcatcaaatttccaatttcttatgaagcggttctgttattttcccatt 49495938  T
Q  409 gttgacagaacacaactagaaatggaacaattatgagtaactgttttccaattaaatacacaaaccaaggaaatgatatgattcaattggggtactatta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49495939 gttgacagaacacaactagaaatggaacaattatgagtaactgttttccaattaaatacacaaaccaaggaaatgatatgattcaattggggtactatta 49496038  T
Q  509 tttatggtctcatgtcgtgacataatctcgtagctttgacaaagtggatgtgaaaactgaaaaa--ataagtagaggtgattgacatg 594  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  49496039 tttatggtctcatgtcgtgacataatctcgtagctttgac-aagtggatgtgaaaactgaaaaaatataagtagaggtgattgacatg 49496125  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 10184944 - 10184879
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  10184944 aacacaatacaaggtggaacagcacatgacaaacttttatggtattgaacaattttttgtcttata 10184879  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 43189917 - 43189852
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||| |||| ||| |||||||| | ||||||||||||||||||| || |||||||||||||    
T  43189917 aacacaatacaaggaagagcaacacatgataaacttttatggtattgaataattttttgtcttata 43189852  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 45577845 - 45577797
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaa 79  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  45577845 aacacaacataaggttgaacaacacatgacaaagttttatggtattgaa 45577797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 53200797 - 53200740
Alignment:
Q  33 cacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgt 90  Q
    ||||| |||||| | ||||||||| |||||| ||||||||||||||| || |||||||    
T  53200797 cacaacataaggcataacaacacagaacaaatttttatggtattgaataattttttgt 53200740  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 42035826 - 42035769
Alignment:
Q  39 ataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  42035826 ataaggtagaacaacacttgacaaacttttatggtattgaacaattttttctcttata 42035769  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 28625060 - 28625009
Alignment:
Q  46 agaacaacacataacaaacttttatggtattgaacaagtttttgtcttataa 97  Q
    |||||||||||  ||||||||||||||||||||| || ||||||||||||||    
T  28625060 agaacaacacaagacaaacttttatggtattgaataattttttgtcttataa 28625009  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 42547519 - 42547471
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaa 79  Q
    ||||| ||| ||||||||||||||||| ||||||||||||| |||||||    
T  42547519 aacacgatacaaggtagaacaacacatgacaaacttttatgatattgaa 42547471  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 22484899 - 22484834
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||| ||||||||||||| ||||  ||||| ||||||||||||||| || ||| ||| |||||    
T  22484899 aacacaacataaggtagaacagcacaagacaaatttttatggtattgaataattttctgtattata 22484834  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 35004332 - 35004281
Alignment:
Q  28 aataacacaatataaggtagaacaacacataacaaacttttatggtattgaa 79  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  35004332 aataacacaatacaaggcagaacaacacataacaaacttttatgatattgaa 35004281  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 31870301 - 31870236
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    |||||||||||||| |||||||||||| ||||| |||||||| |||||| || ||||||| |||||    
T  31870301 aacacaatataagggagaacaacacatgacaaatttttatggcattgaataattttttgttttata 31870236  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 18597348 - 18597294
Alignment:
Q  42 aggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    |||||||||||||||||| ||| ||||||||||||||| || ||||||| |||||    
T  18597348 aggtagaacaacacataataaatttttatggtattgaataattttttgttttata 18597294  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 32859979 - 32860027
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaa 79  Q
    |||||||||||||| |||||| ||||  ||||| |||||||||||||||    
T  32859979 aacacaatataaggcagaacagcacaatacaaatttttatggtattgaa 32860027  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 34284053 - 34283997
Alignment:
Q  33 cacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttg 89  Q
    ||||||||| || |||||||||||  ||||||||||||||||||||| |||||||||    
T  34284053 cacaatatatgggagaacaacacaagacaaacttttatggtattgaataagtttttg 34283997  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 33937144 - 33937101
Alignment:
Q  33 cacaatataaggtagaacaacacataacaaacttttatggtatt 76  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  33937144 cacactataaggtagaacaacacaagacaaacttttatggtatt 33937101  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 32215451 - 32215409
Alignment:
Q  40 taaggtagaacaacacataacaaacttttatggtattgaacaa 82  Q
    |||| |||||||||||||| |||||||||||| ||||||||||    
T  32215451 taagttagaacaacacatatcaaacttttatgatattgaacaa 32215409  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 38663069 - 38663134
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    |||||||||||||| |||||||||||  ||||| |||||||  |||||| || ||||||| |||||    
T  38663069 aacacaatataagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 38663134  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 24173189 - 24173141
Alignment:
Q  45 tagaacaacacataacaaacttttatggtattgaacaagtttttgtctt 93  Q
    ||||||||||||| ||||||||||| ||||||  |||| ||||||||||    
T  24173189 tagaacaacacatgacaaacttttaaggtatttgacaactttttgtctt 24173141  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 43678121 - 43678077
Alignment:
Q  52 acacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||||| | |||||||||||| |||| |||||||||||||    
T  43678121 acacataacaagcctttatggtattgtacaattttttgtcttata 43678077  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 16485986 - 16485921
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    |||||||||||||| |||||| |||| |||||| ||||||||||||||| || ||| ||| |||||    
T  16485986 aacacaatataaggcagaacagcacaaaacaaatttttatggtattgaataattttctgtattata 16485921  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 29456009 - 29455944
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||| |||||| | |||||||||| ||||||||||||||||||||| ||  ||| ||||||||    
T  29456009 aacacaacataaggcaaaacaacacatgacaaacttttatggtattgaataatatttggtcttata 29455944  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 1363579 - 1363634
Alignment:
Q  41 aaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||||||||||| ||||| |||||||| |||||| || ||||||| |||||    
T  1363579 aaggtagaacaacacatgacaaatttttatggcattgaataattttttgttttata 1363634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 8083880 - 8083830
Alignment:
Q  46 agaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||| ||||||||||||| |||||||| | || |||||||||||||    
T  8083880 agaacaacatataacaaacttttgtggtattgcataattttttgtcttata 8083830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 15035401 - 15035357
Alignment:
Q  46 agaacaacacataacaaacttttatggtattgaacaagtttttgt 90  Q
    |||||||||||| ||||| ||||||||||||||| || |||||||    
T  15035401 agaacaacacatgacaaatttttatggtattgaataattttttgt 15035357  T

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Target: scaffold0650 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 1796 - 1746
Alignment:
Q  46 agaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||||||| |||||| ||||||||||||||| || ||||||| |||||    
T  1796 agaacaacacagaacaaatttttatggtattgaataattttttgttttata 1746  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 26180459 - 26180417
Alignment:
Q  34 acaatataaggtagaacaacacataacaaacttttatggtatt 76  Q
    |||| |||||| |||||||| ||||||||||||||||||||||    
T  26180459 acaacataaggcagaacaacccataacaaacttttatggtatt 26180417  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 4689866 - 4689801
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaacaagtttttgtcttata 96  Q
    ||||||| |||||| |||||||||||| ||||| |||||||  |||||| || ||||||| |||||    
T  4689866 aacacaacataaggcagaacaacacatgacaaatttttatgacattgaataattttttgttttata 4689801  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 16062238 - 16062190
Alignment:
Q  31 aacacaatataaggtagaacaacacataacaaacttttatggtattgaa 79  Q
    ||||||| |||||  ||||||||||| |||||| |||||||||||||||    
T  16062238 aacacaacataagacagaacaacacagaacaaatttttatggtattgaa 16062190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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