View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_low_31 (Length: 339)

Name: NF20983_low_31
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_low_31
NF20983_low_31
[»] chr8 (1 HSPs)
chr8 (19-325)||(44728653-44728959)
[»] chr1 (2 HSPs)
chr1 (19-130)||(12634254-12634367)
chr1 (70-147)||(42263737-42263817)
[»] chr5 (2 HSPs)
chr5 (44-147)||(28274091-28274197)
chr5 (44-147)||(28270851-28270957)
[»] chr7 (2 HSPs)
chr7 (20-94)||(23757365-23757439)
chr7 (32-147)||(20462435-20462553)
[»] chr3 (2 HSPs)
chr3 (97-148)||(8433158-8433209)
chr3 (22-66)||(34302689-34302733)
[»] chr4 (1 HSPs)
chr4 (95-131)||(965369-965405)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 44728959 - 44728653
Alignment:
Q  19 tgaaagagttttgtcatgaatagacacaatgattacattgcttcaatatttaagcaatacatcctttcactaaaagtctattcaaccattgctacttttc 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44728959 tgaaagagtttcgtcatgaatagacacaatgattacattgcttcaatatttaagcaatacatcctttcactaaaagtctattcaaccattgcaacttttc 44728860  T
Q  119 aaatttatattttgggaattcctctcacatgatgcacactctatctccaatgaacgggtgtactttaaacattaccaacactttttgatacgcctgatct 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||     
T  44728859 aaatttatattttgggaattcttctcacatgatgcacactctagctccaattaatgggtgtactttaaacattaccaacactttttgatacgcctgatcc 44728760  T
Q  219 tgatgcgacacttcctatgcaagctagattagttgttactccattgatgcaattggaaggtacatgtggcggttcaagtcagagggttgaggaagagagc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728759 tgatgcgacacttcctatgcaagctagattagttgttactccattgatgcaattggaaggtacatgtggcggttcaagtcagagggttgaggaagagagc 44728660  T
Q  319 aatgaag 325  Q
    |||||||    
T  44728659 aatgaag 44728653  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 12634367 - 12634254
Alignment:
Q  19 tgaaagagttttgtcatgaatagacacaatgattacattgcttcaatatttaagcaatacatcctttcactaaaag--tctattcaaccattgctacttt 116  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||| | || || || ||||||||| ||||||  |||||| || |||||| | |||    
T  12634367 tgaaagagtttcttcatgaatagacacaatggttacattgcttcaatagtcaaacattatatcctttcattaaaagtctctatttaatcattgcaatttt 12634268  T
Q  117 tcaaatttatattt 130  Q
    ||||||||||||||    
T  12634267 tcaaatttatattt 12634254  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 42263737 - 42263817
Alignment:
Q  70 aagcaatacatcctttcactaaaag---tctattcaaccattgctacttttcaaatttatattttgggaattcctctcaca 147  Q
    |||||||||||| ||||||| |||    ||||||||| |||||| |||||||||||||||||||||| ||||||| |||||    
T  42263737 aagcaatacatcttttcacttaaatgtctctattcaatcattgcaacttttcaaatttatattttggaaattcctttcaca 42263817  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 28274091 - 28274197
Alignment:
Q  44 acaatgattacattgcttcaatatttaagcaatacatcctttcactaaaag--tc-tattcaaccattgctacttttcaaatttatattttgggaattcc 140  Q
    |||||| |||||||| ||||||| | |||||||||||| ||||||||||||  || |||||||||||||| ||||| |||||||||||||||| | || |    
T  28274091 acaatggttacattgtttcaatagtcaagcaatacatcgtttcactaaaaggttcatattcaaccattgcaactttccaaatttatattttggaagtttc 28274190  T
Q  141 tctcaca 147  Q
    |||||||    
T  28274191 tctcaca 28274197  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 28270851 - 28270957
Alignment:
Q  44 acaatgattacattgcttcaatatttaagcaatacatcctttcactaaaag--tc-tattcaaccattgctacttttcaaatttatattttgggaattcc 140  Q
    |||||| |||||||| ||||||| | |||||||||||| ||||||| ||||  || ||||||| |||||| |||||||||||||||||||||| | || |    
T  28270851 acaatggttacattgtttcaatagtcaagcaatacatcatttcactgaaaggttcatattcaatcattgcaacttttcaaatttatattttggaagtttc 28270950  T
Q  141 tctcaca 147  Q
    |||||||    
T  28270951 tctcaca 28270957  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 23757365 - 23757439
Alignment:
Q  20 gaaagagttttgtcatgaatagacacaatgattacattgcttcaatatttaagcaatacatcctttcactaaaag 94  Q
    ||||||||||  | |||||||||||||||| |||||||||||||| | | ||||| |||||||||||||| ||||    
T  23757365 gaaagagtttctttatgaatagacacaatggttacattgcttcaagaatcaagcattacatcctttcactgaaag 23757439  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 20462553 - 20462435
Alignment:
Q  32 tcatgaatagacacaatgattacattgcttcaatatttaagcaatacatcctttcactaaaag---tctattcaaccattgctacttttcaaatttatat 128  Q
    |||||||| |||| |||| |||||||| | ||||| | ||||| | |||| ||||||| ||||   | |||||||  |||  |||||||||||||||| |    
T  20462553 tcatgaattgacataatggttacattggtccaatagtcaagcattgcatcttttcacttaaaggtctttattcaaatattcatacttttcaaatttattt 20462454  T
Q  129 tttgggaattcctctcaca 147  Q
    ||||| |||| ||||||||    
T  20462453 tttggaaatttctctcaca 20462435  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 8433158 - 8433209
Alignment:
Q  97 tattcaaccattgctacttttcaaatttatattttgggaattcctctcacat 148  Q
    |||| ||||||||| ||||||||| |||||||||||| ||||||||||||||    
T  8433158 tatttaaccattgcaacttttcaagtttatattttggaaattcctctcacat 8433209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34302733 - 34302689
Alignment:
Q  22 aagagttttgtcatgaatagacacaatgattacattgcttcaata 66  Q
    ||||||||  |||| ||||||||||||| ||||||||||||||||    
T  34302733 aagagtttcttcataaatagacacaatggttacattgcttcaata 34302689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 965405 - 965369
Alignment:
Q  95 tctattcaaccattgctacttttcaaatttatatttt 131  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  965405 tctatttaaccattgcaacttttcaaatttatatttt 965369  T

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