View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_low_32 (Length: 336)

Name: NF20983_low_32
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_low_32
NF20983_low_32
[»] chr3 (11 HSPs)
chr3 (18-261)||(12110202-12110451)
chr3 (17-260)||(12128036-12128285)
chr3 (18-200)||(12123873-12124055)
chr3 (22-132)||(30056020-30056130)
chr3 (205-261)||(12124083-12124139)
chr3 (22-91)||(30079722-30079791)
chr3 (26-89)||(29920769-29920832)
chr3 (26-89)||(29927005-29927068)
chr3 (26-89)||(29969922-29969985)
chr3 (26-89)||(29976159-29976222)
chr3 (19-132)||(30157277-30157390)
[»] chr8 (3 HSPs)
chr8 (23-126)||(7941518-7941621)
chr8 (23-126)||(7947069-7947172)
chr8 (19-126)||(7950483-7950590)
[»] chr6 (3 HSPs)
chr6 (19-132)||(6802988-6803101)
chr6 (18-132)||(6785830-6785944)
chr6 (44-127)||(12837565-12837648)
[»] scaffold0759 (2 HSPs)
scaffold0759 (276-325)||(2612-2661)
scaffold0759 (201-253)||(2449-2501)
[»] chr7 (1 HSPs)
chr7 (55-126)||(15129286-15129357)
[»] chr5 (2 HSPs)
chr5 (278-325)||(26792481-26792528)
chr5 (201-253)||(26792282-26792334)
[»] scaffold0233 (1 HSPs)
scaffold0233 (277-325)||(17911-17959)
[»] scaffold0416 (1 HSPs)
scaffold0416 (201-253)||(7294-7346)
[»] scaffold0112 (1 HSPs)
scaffold0112 (201-253)||(40835-40887)
[»] scaffold0093 (1 HSPs)
scaffold0093 (208-326)||(21214-21336)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 12110202 - 12110451
Alignment:
Q  18 cgaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatgga 117  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  12110202 cgaggaacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatgtcgaatatggg 12110301  T
Q  118 tggtgttttgtctctgtaagtgaagcagaacgttactttaagattggatccaacactgctgtaaaaagtttcttcaagattgcc------tctaaagaaa 211  Q
    |||||||||| |||||||   ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||||||||||      |||||||||     
T  12110302 tggtgttttgcctctgtagccgaagcagaacggtacttcaaaattggatcaaacactgcagtaaaaagtttgttcaagattgcctctaaatctaaagaac 12110401  T
Q  212 aagactaccttaagatggctctggaaattgccactgaagaatgatatgtc 261  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  12110402 aagactaccttaagatggctttggaaattgccacttaagaatgatatgtc 12110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 12128036 - 12128285
Alignment:
Q  17 acgaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatgg 116  Q
    ||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  12128036 acgagtaacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtggaaacttttgtgctcgttatgctaatgatgatatcgaatatgg 12128135  T
Q  117 atggtgttttgtctctgtaagtgaagcagaacgttactttaagattggatccaacactgctgtaaaaagtttcttcaagattgcc------tctaaagaa 210  Q
    ||||||||||| ||| ||    ||||||||||| ||||| || |||||||| |||||||| ||||||| ||| ||||||||||||      |||||||||    
T  12128136 atggtgttttgcctcagtcgccgaagcagaacgatacttcaaaattggatcaaacactgcagtaaaaaatttgttcaagattgcctctaaatctaaagaa 12128235  T
Q  211 aaagactaccttaagatggctctggaaattgccactgaagaatgatatgt 260  Q
     |||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  12128236 caagactaccttaagatggctttggaaattgcaacttaagaatgatatgt 12128285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 12123873 - 12124055
Alignment:
Q  18 cgaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatgga 117  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12123873 cgaggaacatcctaacttatgccaaactcatgctgaatgcttcaagaagggaagtggaaacttttgtgcccgttatgctaatgctgatatcgaatatgga 12123972  T
Q  118 tggtgttttgtctctgtaagtgaagcagaacgttactttaagattggatccaacactgctgtaaaaagtttcttcaagattgc 200  Q
    |||||||||| |||||||   ||||||||||  ||||| || |||||||| |||||||| ||||||||||| |||||||||||    
T  12123973 tggtgttttgcctctgtagccgaagcagaacagtacttcaaaattggatcaaacactgcagtaaaaagttttttcaagattgc 12124055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 30056130 - 30056020
Alignment:
Q  22 gaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggatggt 121  Q
    |||||||||||||  ||| ||||||||  ||| ||||  |||||||| |||||||| ||||||||||||| ||||||| |||||||| ||||||| ||||    
T  30056130 gaacatcctaactactgcgaaactcatactgaatgcacaaagaagggtagtgggaatttttgtgctcgttttgctaattctgatatcaaatatggctggt 30056031  T
Q  122 gttttgtctct 132  Q
    |||||| ||||    
T  30056030 gttttgcctct 30056020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 12124083 - 12124139
Alignment:
Q  205 aaagaaaaagactaccttaagatggctctggaaattgccactgaagaatgatatgtc 261  Q
    |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  12124083 aaagaaaaaggctaccttaagatggctttggaaattgccacttaagaatgatatgtc 12124139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 30079791 - 30079722
Alignment:
Q  22 gaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgtt 91  Q
    ||||||||||||||||||||||||||   ||| ||||  ||||| || |||||||| |||||||||||||    
T  30079791 gaacatcctaacttatgccaaactcacactgaatgcacaaagaaaggtagtgggaatttttgtgctcgtt 30079722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 29920769 - 29920832
Alignment:
Q  26 atcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcg 89  Q
    |||||||||||||||||||||||  ||| ||||  |||||||| ||||| || |||||||||||    
T  29920769 atcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcg 29920832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 29927068 - 29927005
Alignment:
Q  26 atcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcg 89  Q
    |||||||||||||||||||||||  ||| ||||  |||||||| ||||| || |||||||||||    
T  29927068 atcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcg 29927005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 29969922 - 29969985
Alignment:
Q  26 atcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcg 89  Q
    |||||||||||||||||||||||  ||| ||||  |||||||| ||||| || |||||||||||    
T  29969922 atcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcg 29969985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 29976222 - 29976159
Alignment:
Q  26 atcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcg 89  Q
    |||||||||||||||||||||||  ||| ||||  |||||||| ||||| || |||||||||||    
T  29976222 atcctaacttatgccaaactcatactgaatgcaaaaagaagggtagtggaaatttttgtgctcg 29976159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 30157390 - 30157277
Alignment:
Q  19 gaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggat 118  Q
    |||||||| |||||||||||     |||||| ||| ||||  || ||||| |||||||| | ||||||||| | | ||||| |||||||| ||||||| |    
T  30157390 gaggaacaacctaacttatgttggtctcatgatgaatgcacaaaaaagggtagtgggaattattgtgctcgctttcctaattctgatatcaaatatggct 30157291  T
Q  119 ggtgttttgtctct 132  Q
    ||||||||| ||||    
T  30157290 ggtgttttgcctct 30157277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 7941518 - 7941621
Alignment:
Q  23 aacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggatggtg 122  Q
    ||||| |||||||||| ||| |||||| ||| ||||  ||||| |||||||| | |||||||||||||||| ||||| ||||||||||||||||||||||    
T  7941518 aacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggtg 7941617  T
Q  123 tttt 126  Q
    ||||    
T  7941618 tttt 7941621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 7947069 - 7947172
Alignment:
Q  23 aacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggatggtg 122  Q
    ||||| |||||||||| ||| |||||| ||| ||||  ||||| |||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||    
T  7947069 aacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcaaatatggatggtg 7947168  T
Q  123 tttt 126  Q
    ||||    
T  7947169 tttt 7947172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 7950483 - 7950590
Alignment:
Q  19 gaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggat 118  Q
    |||||||||||||||||||| ||  |||| | ||| ||||  ||||||| |||||| | ||||||||| |||||| ||||| ||||||||||| ||||||    
T  7950483 gaggaacatcctaacttatgtcagtctcacgctgattgcacgaagaaggaaagtggaagcttttgtgcccgttatcctaatcctgatatcgaacatggat 7950582  T
Q  119 ggtgtttt 126  Q
    ||||||||    
T  7950583 ggtgtttt 7950590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 6803101 - 6802988
Alignment:
Q  19 gaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggat 118  Q
    |||||||||||||||||||| ||  |||||| ||| ||||  ||||| ||||||||||  ||||| ||||||||| |||||  |||||||||||||||||    
T  6803101 gaggaacatcctaacttatgtcagtctcatgctgattgcacgaagaaaggaagtgggagtttttgcgctcgttatcctaatcttgatatcgaatatggat 6803002  T
Q  119 ggtgttttgtctct 132  Q
    ||||||||| ||||    
T  6803001 ggtgttttgcctct 6802988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 6785944 - 6785830
Alignment:
Q  18 cgaggaacatcctaacttatgccaaactcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatgga 117  Q
    ||||||||||||||| ||||||||  |||||| ||| || |  ||||||  ||||||||  ||||||||||||||| ||||| || ||||||||||||||    
T  6785944 cgaggaacatcctaatttatgccagtctcatgttgattgtacaaagaagaaaagtgggagtttttgtgctcgttatcctaatcctaatatcgaatatgga 6785845  T
Q  118 tggtgttttgtctct 132  Q
    |||| ||||| ||||    
T  6785844 tggtattttgcctct 6785830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 12837648 - 12837565
Alignment:
Q  44 ctcatggtgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggatggtgttttg 127  Q
    |||||| ||| |||| ||||||||||||||||| |||||| ||||||| | ||||| |||||| | || |||| ||||||||||    
T  12837648 ctcatgatgaatgcaacaagaagggaagtgggagcttttgcgctcgttctcctaattctgataacaaaaatggctggtgttttg 12837565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 2612 - 2661
Alignment:
Q  276 ccaaccatgcatgttatcatgcatctactactatgaataaaacaaccttt 325  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  2612 ccaaccatgcatgttatcatgcatctactactttaaataaaacaaccttt 2661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 2449 - 2501
Alignment:
Q  201 ctctaaagaaaaagactaccttaagatggctctggaaattgccactgaagaat 253  Q
    |||||| |||||| ||||| | ||||||||| |||||||||||||| ||||||    
T  2449 ctctaatgaaaaaaactacttgaagatggctttggaaattgccacttaagaat 2501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 15129357 - 15129286
Alignment:
Q  55 tgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatatcgaatatggatggtgtttt 126  Q
    |||||||||||||||| |||||  || |||||||||||| ||||| ||||||||||| |||| |||||||||    
T  15129357 tgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgtttt 15129286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 26792481 - 26792528
Alignment:
Q  278 aaccatgcatgttatcatgcatctactactatgaataaaacaaccttt 325  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  26792481 aaccatgcatgttatcatgcatctactactttaaataaaacaaccttt 26792528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 26792282 - 26792334
Alignment:
Q  201 ctctaaagaaaaagactaccttaagatggctctggaaattgccactgaagaat 253  Q
    |||||| |||||| ||||| | ||||||||| |||||||||||||| ||||||    
T  26792282 ctctaatgaaaaaaactacttgaagatggctttggaaattgccacttaagaat 26792334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 17911 - 17959
Alignment:
Q  277 caaccatgcatgttatcatgcatctactactatgaataaaacaaccttt 325  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||    
T  17911 caaccatgcatgttatcatgcatctaatactttaaataaaacaaccttt 17959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 7346 - 7294
Alignment:
Q  201 ctctaaagaaaaagactaccttaagatggctctggaaattgccactgaagaat 253  Q
    |||||| |||||||||||| | ||||||||| |||||||||||||| ||||||    
T  7346 ctctaatgaaaaagactacttgaagatggctttggaaattgccacttaagaat 7294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 40887 - 40835
Alignment:
Q  201 ctctaaagaaaaagactaccttaagatggctctggaaattgccactgaagaat 253  Q
    |||||| |||||||||||| | ||||||||| |||||||||||||| ||||||    
T  40887 ctctaatgaaaaagactacttgaagatggctttggaaattgccacttaagaat 40835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 21214 - 21336
Alignment:
Q  208 gaaaaagactaccttaagatggctctggaaattgccactgaagaatgatatgtcgnnnnnnnnnnnnnccaaccatgcatgttat----catgcatctac 303  Q
    |||||||||||| | | ||||||| |||||||||||||| |||||| |||||||              |||||||||||||||||    |||||||||||    
T  21214 gaaaaagactacttgaggatggctttggaaattgccacttaagaattatatgtctcaaaaactaaaaaccaaccatgcatgttatcatgcatgcatctac 21313  T
Q  304 tactatgaataaaacaacctttg 326  Q
    |||| | ||||||||||||||||    
T  21314 tactttaaataaaacaacctttg 21336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University