View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20983_low_33 (Length: 332)
Name: NF20983_low_33
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 174 - 318
Target Start/End: Complemental strand, 5676749 - 5676608
Alignment:
| Q |
174 |
acaaatgggcactcaacacttggacaatgtcaattatatcacttatgaattcatagctcatcaatagaatacaattgtgtatgcaatgctcctacgataa |
273 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5676749 |
acaaatgggcactcaacacttagacaatgtcaattat--cactt-tgaattcatagctcatcaatagaatacaattgtgtatgcaatgctcctacgataa |
5676653 |
T |
|
| Q |
274 |
aatatgcatgtggtactaaacctattcattgattgtggtactgat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5676652 |
aatatgcatgtggtactaaacctattcatcgattgtggtactgat |
5676608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 174 - 318
Target Start/End: Complemental strand, 5701801 - 5701660
Alignment:
| Q |
174 |
acaaatgggcactcaacacttggacaatgtcaattatatcacttatgaattcatagctcatcaatagaatacaattgtgtatgcaatgctcctacgataa |
273 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5701801 |
acaaatgggcactcaacacttagacaatgtcaattat--cactt-tgaattcatagctcatcaatagaatacaattgtgtatgcaatgctcctacgataa |
5701705 |
T |
|
| Q |
274 |
aatatgcatgtggtactaaacctattcattgattgtggtactgat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5701704 |
aatatgcatgtggtactaaacctattcatcgattgtggtactgat |
5701660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5676931 - 5676840
Alignment:
| Q |
1 |
tacattcaaaataatatggatgcacaaatataatgagtagactcaaagagataacataaataaaacataattagccatatacattatcttca |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5676931 |
tacattcaaaataatatggatgcacaaatataatgagtagtctcaaagagataacataagtaaaacataattagccatatacattatcttca |
5676840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5701983 - 5701892
Alignment:
| Q |
1 |
tacattcaaaataatatggatgcacaaatataatgagtagactcaaagagataacataaataaaacataattagccatatacattatcttca |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5701983 |
tacattcaaaataatatggatgcacaaatataatgagtagtctcaaagagataacataagtaaaacataattagccatatacattatcttca |
5701892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10152260 - 10152347
Alignment:
| Q |
1 |
tacattcaaaataatatggatgcacaaatataatgagtagactcaaagagataacataaataaaacataattagccatatacattatc |
88 |
Q |
| |
|
|||||||||||||||| || |||| ||| || ||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
10152260 |
tacattcaaaataatacgggtgcataaacatcatgagtagactcaaagagatagcatacataaaacacaattaaccatacacattatc |
10152347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 26278457 - 26278514
Alignment:
| Q |
210 |
tatcacttatgaattcatagctcatcaatagaatacaattgtgtatgcaatgctccta |
267 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
26278457 |
tatcatttatgaattcacaactcattaatagaatacaattatgtatgcaatgctccta |
26278514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13236461 - 13236513
Alignment:
| Q |
1 |
tacattcaaaataatatggatgcacaaatataatgagtagactcaaagagata |
53 |
Q |
| |
|
|||||||||||||||| || |||| |||||| ||||||| ||||||||||||| |
|
|
| T |
13236461 |
tacattcaaaataatacgggtgcataaatatcatgagtaaactcaaagagata |
13236513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26278321 - 26278373
Alignment:
| Q |
1 |
tacattcaaaataatatggatgcacaaatataatgagtagactcaaagagata |
53 |
Q |
| |
|
|||||||||||||||| | |||| ||| || ||||||||||||||||||||| |
|
|
| T |
26278321 |
tacattcaaaataatacaggtgcataaacatcatgagtagactcaaagagata |
26278373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University