View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20983_low_37 (Length: 299)
Name: NF20983_low_37
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 45 - 292
Target Start/End: Complemental strand, 52794369 - 52794124
Alignment:
| Q |
45 |
atgtatgcagtgaatgcaaaatcggacgcgtttgtattatgaacaaaatcaattcatttccnnnnnnn-gaatggtactgcatctctaatttaagcaaat |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52794369 |
atgtatgcagtgaatgcaaaatcggacgcgtttgtattatgaacaaaatcaattcatttccaataaaaagaatggtactgcatctctaatttaagcaaat |
52794270 |
T |
|
| Q |
144 |
cattcaataatcagtaaagtaccacatataaaatggtattgtacaagtaagccattaattaccacgcgtttgattcatcaacaaaatcaaatcatttcta |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52794269 |
cattcaataatcagtaaagtaccacatataaaatggtattgcacaagtaagcc---tattaccacgcgtttgattcatcaacaaaatcaaatcctttcta |
52794173 |
T |
|
| Q |
244 |
taaataccgatnnnnnnnttgtttctaaaaacaaatcgtatttcatctc |
292 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
52794172 |
gaaataccgataaaaaaattgtttctataaacaaatcgtatttcatctc |
52794124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University