View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_39 (Length: 298)
Name: NF20983_low_39
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 55162514 - 55162792
Alignment:
| Q |
1 |
tagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaattcacgaatt |
100 |
Q |
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| T |
55162514 |
tagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttcttaaccttacaggtacacagttaagatctgctgtgaattcacgaatt |
55162613 |
T |
|
| Q |
101 |
caaagtctcatgaaccaatacaaaacagaattcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttggacccaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162614 |
caaagtctcatgaaccaatacaaaacagaattcatacattgggatatcagtaacgaaatgcttcattttgatttctacgaacaaaggcttggacccaatg |
55162713 |
T |
|
| Q |
201 |
ctacatttcatttctttgaggcagcacatgaatcagatcctctagcaactctgtttatgaatgacttcaatgttgtaga |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162714 |
ctacatttcatttctttgaggcagcacatgaatcagatcctctagcaactctgtttatgaatgacttcaatgttgtaga |
55162792 |
T |
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