View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_44 (Length: 280)
Name: NF20983_low_44
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 8176298 - 8176545
Alignment:
| Q |
18 |
tgcccaaagtcataagttgttatcaaggttgtctccttctgaagcttcttatgtcataaagacaataagggcttggggcaattgtttcggaatgggcctc |
117 |
Q |
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| T |
8176298 |
tgcccaaagtcataagttgttatcaagcttgtctccttctgaagcttcttatgtcataaagacaataagggcttggggcaattgtttcggaatgggcctc |
8176397 |
T |
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| Q |
118 |
aacccacatcatagatccaatgcatgactacacattaatcgataatccgtgtcattcaagaaaacatagaagacttcatgcgtgcctcactgcacagaag |
217 |
Q |
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| T |
8176398 |
aacccacatcacaaatccaatgcatgactacacattaaccgataatccacgtcattcaagaaaacatagaagatttcatgcgtgcctcactgcacagaag |
8176497 |
T |
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| Q |
218 |
cgcatctcatccaacctgcaccactcatatgatctcaaacaatctcct |
265 |
Q |
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| T |
8176498 |
cgcatctcatccaacctgcaccactcatatgatctcaaacaatctcct |
8176545 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 11748516 - 11748480
Alignment:
| Q |
59 |
aagcttcttatgtcataaagacaataagggcttgggg |
95 |
Q |
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| T |
11748516 |
aagcttcttacgtcataaagacgataagggcttgggg |
11748480 |
T |
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