View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20983_low_46 (Length: 250)
Name: NF20983_low_46
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19184866 - 19184631
Alignment:
| Q |
1 |
taaacaacaatatgagtgttttggtggttgaaatgggagaaaagtggggaaaggtacacgaaaatagcatgagttggaggaatatgccattacgtaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19184866 |
taaacaacaatatgagtgttttggtggttgaaatgggagaaaagtggggaaaggtacacgaaaatagcatgagttggaggaatatgccattatgtaggag |
19184767 |
T |
|
| Q |
101 |
gctgttattttttggcacctatccgatcatatacgacgatgaataggcggtttgataagccatttattgggtggccgtagctcaaaaacaaactagtgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19184766 |
gctgttattttttggcacctatccgatcatatacgacgatgaataggcggtttgataagccatttattgggtggccgtagctcaaaaacaaactagtgag |
19184667 |
T |
|
| Q |
201 |
gtggatgaatgtatataacataactgtgatatatct |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19184666 |
gtggatgaatatatataacataactgtgatatatct |
19184631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University