View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_49 (Length: 237)
Name: NF20983_low_49
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_49 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19184961 - 19185197
Alignment:
| Q |
1 |
aatcatcgaatcctaatatatatgttttgtttttctttctctctaacaacatcaaccctagatcaaaacctaggaatatcgatcatcgaatccaacatat |
100 |
Q |
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| T |
19184961 |
aatcatcgaatcctaatatatatgttttgtttttctttctctctaacaacatcaaccctagatcaaaacctaggaatatcgatcatcaaatccaacatat |
19185060 |
T |
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| Q |
101 |
tcgccatcgatcatgtcaacatgcagccttcaaaaaatatttgaaaatcctccattgtatgcagaaaacccaactatacttcttgatcaatctcttgaat |
200 |
Q |
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| T |
19185061 |
tagccatcgatcatgtcaacatgcagccttcaaaaaatatttgaaaatcctccattgtatccagaaaacccaactatacttcttgatcaatctcttgaat |
19185160 |
T |
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| Q |
201 |
catggaagaaccaaatcaaacccatacaacattcttc |
237 |
Q |
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| T |
19185161 |
catggaagaaccaaatcaaacccatacaacattcttc |
19185197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 19184887 - 19184973
Alignment:
| Q |
17 |
tatatatgttttgtttttctttctctctaac----------aacatcaaccctagatcaaaacctaggaatatcgatcatcgaatcc |
93 |
Q |
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| T |
19184887 |
tatatatgttttgtttttctttctctctaacctatgagaaaaacatcaaccctagatcaaaacctaggaatatcaatcatcgaatcc |
19184973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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