View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_7 (Length: 556)
Name: NF20983_low_7
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_7 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 109 - 556
Target Start/End: Complemental strand, 41381418 - 41380961
Alignment:
| Q |
109 |
gatgggatgtcatgatcaaatttagcgaaattttgaagtaattcttaaaatttaaaagtgtcgatctcatttcacgacaat--ttagtctttgaaaatat |
206 |
Q |
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| T |
41381418 |
gatgggatgtcatgatcaaatttagcgaaattttgaagtaattcttaaaatttaaaagtgtcgatctcatttcacgacaatatttagtctttgaaaatat |
41381319 |
T |
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| Q |
207 |
attttcataa------------aatgaagttaaatctatagatcattttattaaaatttgtagtttatannnnnnnacatatgataacaaagtcctaccc |
294 |
Q |
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| T |
41381318 |
attttcataattaatttcataaaatgaagttaaatctatagatcatttta---aaatttgtagtttatatttttt-atatatgataacaaagtcctaccc |
41381223 |
T |
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| Q |
295 |
ttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttc |
394 |
Q |
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| T |
41381222 |
ttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttc |
41381123 |
T |
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| Q |
395 |
aaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatg |
494 |
Q |
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| T |
41381122 |
aaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatg |
41381023 |
T |
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| Q |
495 |
tattttcttttggttttatgtgtttgcattgnnnnnnnncagcattaacaatgttcttagcc |
556 |
Q |
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| T |
41381022 |
tattttcttttggttttatgtgtttgcattgttttttttcagcattaacaatgttcttagcc |
41380961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 274 - 479
Target Start/End: Original strand, 8042914 - 8043119
Alignment:
| Q |
274 |
tatgataacaaagtcctacccttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtg |
373 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| ||||||||||| | |
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| T |
8042914 |
tatgataacaaagtcctacatttataattttaatttcatattttgattgttgatgtaggtttttgcgatgccagtgtttgacttgattgaaaataagtgg |
8043013 |
T |
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| Q |
374 |
ttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggat |
473 |
Q |
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| T |
8043014 |
ttggtggagaaactgaatttcaaatcaagtaaaatgcttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttgatt |
8043113 |
T |
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| Q |
474 |
ttttaa |
479 |
Q |
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|||||| |
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| T |
8043114 |
ttttaa |
8043119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 304 - 479
Target Start/End: Complemental strand, 7970765 - 7970590
Alignment:
| Q |
304 |
taatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagt |
403 |
Q |
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|||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
7970765 |
taatttgatattttgattgttggtgtaggtttttgcaatgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttcaaatcaagt |
7970666 |
T |
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| Q |
404 |
aaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa |
479 |
Q |
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| T |
7970665 |
aaaatgcttcgttttattgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa |
7970590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 294 - 459
Target Start/End: Original strand, 8032956 - 8033118
Alignment:
| Q |
294 |
cttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaattt |
393 |
Q |
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|||| ||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||| | |||||| | || |||||| ||||||||||||| |
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| T |
8032956 |
cttacaattttaatttcatattttggtttttgttgtagatttttgcaatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaattt |
8033052 |
T |
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| Q |
394 |
caaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagt |
459 |
Q |
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| T |
8033053 |
caaaccaagtaaaatcctccgttttgttgcgcgtaactcatacgtgggtaagtgaaataaaatagt |
8033118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 7970967 - 7970903
Alignment:
| Q |
117 |
gtcatgatcaaatttagcgaaattttgaagtaattcttaaaatttaaaagtgtcgatctcatttc |
181 |
Q |
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| T |
7970967 |
gtcatgatcaaatttaacgaaatttcaaagtaattcttaaaatttaaatgtatcgatctcatttc |
7970903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 294 - 445
Target Start/End: Complemental strand, 2149 - 2001
Alignment:
| Q |
294 |
cttataatattaatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaattt |
393 |
Q |
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|||| ||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||| | |||||| | || |||||| ||||||||||||| |
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| T |
2149 |
cttacaattttaatttcatattttggtttttgttgtagatttttgcaatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaattt |
2053 |
T |
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| Q |
394 |
caaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgggtaag |
445 |
Q |
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|||| ||||| ||||| || |||||||||||||| |||||||||||||| |
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| T |
2052 |
caaaccaagtgccatcctacgctttgttgtgcgtaacatatacgtgggtaag |
2001 |
T |
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