View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_low_9 (Length: 527)
Name: NF20983_low_9
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Original strand, 239105 - 239602
Alignment:
| Q |
17 |
gatgaaggctaaactgttaaagcatatgtcatgttcaagatacattattagttcttcatccaggatgaggtatagttatattgtcatactctctgaaaag |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
239105 |
gatgaaggctaaactgttaaagcatgtgtcatgttcaagatacattattagttcttcatccaggatgaggtatagttatattgtcatactctctgaaaag |
239204 |
T |
|
| Q |
117 |
cctaaaaaaccaaattctagcaatgcatatgcagtt-----aatataaaagcaatcactggtaacaggaataaaaatgacatttattttggcacattgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
239205 |
cctaaaaaaccaaattctagcaatgcatatgcagtttcaataatataaaagcaatcactggtaacaggaataaaaatgacatttattttggcacattgaa |
239304 |
T |
|
| Q |
212 |
ctctaagaaagaataatcaagtatcaattgaggagtagctaaactgtgcatgatattgcagaaattgagggggaatgaatgaatgaaacaatagacaact |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
239305 |
ctctaagaaagaataatcaagtatgaattgaggagtagctaaactgtgcatgatattgcagaaattgagggggaatgaatgaatgaaacaatagacaact |
239404 |
T |
|
| Q |
312 |
ttaagaatgatgacagttatatggggaagtcacaattccatagtctgaactttaggaagttgattgcaagaaggcaagtaagaaagt-aaaaagtaaagg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
239405 |
ttaagaatgatgacagttatatggggaagtcacaattccatagtctgaactttaggaagttgattgcaagaaggcaagtaagaaagtaaaaaagtaaagg |
239504 |
T |
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| Q |
411 |
gaaatacctcaaggaaattaggaatactccagcggacaacattgcgaataatacctccattagagctatcacggcattcaaatttctgaaatatttgt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
239505 |
gaaatacctcaaggaaattaggaatactccagcggacaacattgcgaataatacctccattagagatatgacggcattcaaatttctgaaatatttgt |
239602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 228244 - 228469
Alignment:
| Q |
17 |
gatgaaggctaaactgttaaagcatatgtcatgttcaagatacattattagttcttcatccaggatgaggtatagttatattg----tcatactctctga |
112 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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| T |
228244 |
gatgaaagctaaactgttaaagcatgtgtcatgttcaagatacataattagttcttcatcaaggatgaagtatagttatattggcatacatactctctga |
228343 |
T |
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| Q |
113 |
aaagcctaaaaaaccaaattctagcaatgcatatgcagt-----taatataaaagcaatcactggtaacaggaataaaaatgacatttattttggcacat |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
228344 |
aaagcctaaaaaaccaaaacctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgacattt-ttttggcacat |
228442 |
T |
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| Q |
208 |
tgaactctaagaaagaataatcaagta |
234 |
Q |
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||||||||||||||||||||||||||| |
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| T |
228443 |
tgaactctaagaaagaataatcaagta |
228469 |
T |
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