View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20984_high_7 (Length: 227)
Name: NF20984_high_7
Description: NF20984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20984_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 41106807 - 41106663
Alignment:
| Q |
28 |
aaatagtagaatcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactagacaacacatctatccatccagaataatacatcttacta |
127 |
Q |
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| T |
41106807 |
aaatagtagaatcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactagacaacacatctatccatccagaataatacatcttacta |
41106708 |
T |
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| Q |
128 |
ttgttgaacgaacgatgtaacttacttatattaatactaatataa |
172 |
Q |
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| T |
41106707 |
ttgttgaacgaacgatgtaacttacttatattaatactaatataa |
41106663 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 29456765 - 29456836
Alignment:
| Q |
28 |
aaatagtagaatcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactagacaacacatc |
99 |
Q |
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|||||||||||||||||| |||||||| |||||||||||| || |||||| || |||||||| |||||||| |
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| T |
29456765 |
aaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaacttgtctactagataacacatc |
29456836 |
T |
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