View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20984_low_3 (Length: 466)
Name: NF20984_low_3
Description: NF20984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20984_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 295 - 449
Target Start/End: Complemental strand, 32372411 - 32372258
Alignment:
| Q |
295 |
tcattttaaattatcatgaaagaatcaaatacttttcaccatttaaacttagcaatcaaaattgtctacataatcaagacttgacttgtgaactcgtaac |
394 |
Q |
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| T |
32372411 |
tcattttaaaatatcatgaa-gaatcaaatacttttcaccacttaaacttagcaatcaaaattgtctacataatcaggacttgacttgtaaactcgtaag |
32372313 |
T |
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| Q |
395 |
agtccacggtcatggataataaaaaatgacttaaaaacaccggtaaatggcacat |
449 |
Q |
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| T |
32372312 |
agtacacggtcatggataataaaaaatgacttaaaaacaccggtaaatggcacat |
32372258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 32359137 - 32358987
Alignment:
| Q |
11 |
cagagagcaataattgaaaatccaacaaatgactagtttatcatacaatcagagcattaagcttctagttatacaacttgaataaaaagatgaaagcttg |
110 |
Q |
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| T |
32359137 |
cagagagcagtaattgaaaattcaacaaatgactagtttatcatacaatcag--cattaagcttctagttatacaacttgaataaaaagatgaaagctt- |
32359041 |
T |
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| Q |
111 |
cttatattcagctgtatagggttaatgaaatttgcagcagcttgttacaattgcaca |
167 |
Q |
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| T |
32359040 |
---atattcagctgaatagggttaatgaaatttgcagcagcttgttacaattgcaca |
32358987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 32358917 - 32358815
Alignment:
| Q |
169 |
aaatgaattgacaaccttcatacatctgtgcaatctttcctccaaaactggtgcactctttcagaaatcattacactttccaagattatttaatacctaa |
268 |
Q |
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| T |
32358917 |
aaatgagttgacaaccttcatacttctatgcaatcttgcctccaaaactggtgcactctttcagaaatcattacgctttccaaga-tatttaatacctaa |
32358819 |
T |
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| Q |
269 |
gaca |
272 |
Q |
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|||| |
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| T |
32358818 |
gaca |
32358815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 32372509 - 32372433
Alignment:
| Q |
163 |
gcacataaatgaattgacaaccttcatacatctgtgcaatctttcctccaaaactggtgcactctttcagaaatcat |
239 |
Q |
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| T |
32372509 |
gcacaaaaatgagttgacaaccttcatacatctgtgcaatctttcctccaaaagtggtgtagtctttcagaaatcat |
32372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 32358794 - 32358745
Alignment:
| Q |
295 |
tcattttaaattatcatgaaagaatcaaatacttttcaccatttaaactt |
344 |
Q |
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| T |
32358794 |
tcattttaaaatatcatgaaagaatcaaatacttttcaccatttaaactt |
32358745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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