View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20984_low_4 (Length: 356)
Name: NF20984_low_4
Description: NF20984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20984_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 35441003 - 35441348
Alignment:
| Q |
1 |
aagaggaacaaacaaagataatggcacttgtgaagaaaacaaatgagtactatctagcaggagcatcaaaagacaatatgcccaatccttttcatttgtt |
100 |
Q |
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| T |
35441003 |
aagaggaacaaacaaagataatggaacttgtgaagaaaacaaatgagtactatctagcaggagcatcaaaagacaatatgcctaatccttttcatttgtt |
35441102 |
T |
|
| Q |
101 |
tgtgattgtaaaagattttgttgaaatggtgagtcaagcttgcattgaactaaaaaagaaggcagaaaagaagaatgtaggagtcgagtctgcatcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35441103 |
tgtgattgtaaaagattttgttgaaatggtgagtcaagcttgcattgaactaaaaaagaaggcagaaaagaagaatgtaggagttgagtctgcatcaaca |
35441202 |
T |
|
| Q |
201 |
acaccacctttgtctccatcaaagataatgccactgagattccgtaaccttgatttaaattttctgtccaataagttagactctacatgttccagccagt |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
35441203 |
acaccacctttgtctccatcaaagatagtgccactgagattccgtaaccttgatttaaattttctatccaatcagttagactctacatgttccagccagt |
35441302 |
T |
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| Q |
301 |
cagaagatgacttctgaagctggattactgcatttgtatccctatg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35441303 |
cagaagatgacttctgaagctggattactgcatttgtatccctatg |
35441348 |
T |
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