View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20984_low_7 (Length: 294)
Name: NF20984_low_7
Description: NF20984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20984_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 26556134 - 26556397
Alignment:
| Q |
14 |
aagctaacatcaggaactaaaagcaatacttttgaatttgcagagatttaatccaatcaaaaaac-cttacaagattaaaaccaaaaaacgctatagttg |
112 |
Q |
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| T |
26556134 |
aagctaacatcaagaactaaaagcaatacttttgaatttgcagagatttaatccaataaaaaaaaacttacaagactaaaaccaaaaaacattatagttg |
26556233 |
T |
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| Q |
113 |
caaggactaaaattatatttaaacctatagtacgtatactatattcatttattcaccagtatttaattataatagttacaaagtaaggataaactaacct |
212 |
Q |
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| T |
26556234 |
caaggactaaaatcatatttaaaccta--gtacgtatgctatattcatttattcaccagtatttaattataatagttacaaagtaaggataaactaacct |
26556331 |
T |
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| Q |
213 |
atgttcatcttccgtccaaggaacaccctttcgccgttcttgataagaacttgaagccttagttcc |
278 |
Q |
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| T |
26556332 |
atgttcatcttccgtccaaggaacaccctttcgccgttcttgataagaactcgaagccttagttcc |
26556397 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 22159389 - 22159338
Alignment:
| Q |
86 |
gattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaacc |
137 |
Q |
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| T |
22159389 |
gattaaaaccaaaaaacactataattgcatggactaaaatcatatttaaacc |
22159338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 22218097 - 22218046
Alignment:
| Q |
86 |
gattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaacc |
137 |
Q |
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| T |
22218097 |
gattaaaaccaaaaaacactataattgcatggactaaaatcatatttaaacc |
22218046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 50597351 - 50597261
Alignment:
| Q |
49 |
atttgcagagatttaatccaatcaaaaaaccttacaagattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaaccta |
139 |
Q |
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| T |
50597351 |
atttgcagggactaaatccaaacaaaaaaacatactagactaaaactaaaaaacgttacaattgcagggactaaaatcatatttaaaccta |
50597261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 38305977 - 38306021
Alignment:
| Q |
89 |
taaaaccaaaaaacgctatagttgcaaggactaaaattatattta |
133 |
Q |
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| T |
38305977 |
taaaaccaaaaaacactataattgcaaggactaaaatcatattta |
38306021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 18953438 - 18953375
Alignment:
| Q |
72 |
aaaaaaccttacaagattaaaaccaaaaaacgctatagttgcaaggactaaaattatatttaaa |
135 |
Q |
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| T |
18953438 |
aaaaaaacttacaaaactaaaaccaaataacgctatagttggatagactaaaatcatatttaaa |
18953375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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