View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20985_high_1 (Length: 875)

Name: NF20985_high_1
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20985_high_1
NF20985_high_1
[»] chr3 (29 HSPs)
chr3 (445-856)||(792800-793221)
chr3 (145-408)||(783913-784176)
chr3 (445-659)||(7434239-7434456)
chr3 (187-379)||(9587328-9587523)
chr3 (447-585)||(761212-761354)
chr3 (201-386)||(763697-763879)
chr3 (203-386)||(9585271-9585451)
chr3 (801-856)||(760237-760292)
chr3 (336-378)||(771649-771691)
chr3 (84-126)||(781120-781162)
chr3 (194-378)||(43997282-43997472)
chr3 (14-51)||(781085-781122)
chr3 (551-600)||(7942485-7942534)
chr3 (291-379)||(14888755-14888846)
chr3 (544-600)||(2442039-2442095)
chr3 (537-600)||(4142122-4142185)
chr3 (194-249)||(9608626-9608681)
chr3 (194-305)||(44001332-44001443)
chr3 (538-600)||(2644351-2644413)
chr3 (538-600)||(2659141-2659203)
chr3 (537-591)||(2686300-2686354)
chr3 (549-651)||(13498173-13498275)
chr3 (544-600)||(2696727-2696783)
chr3 (541-600)||(956381-956440)
chr3 (194-261)||(2491817-2491884)
chr3 (336-378)||(2456106-2456148)
chr3 (551-609)||(37753347-37753405)
chr3 (575-608)||(754635-754668)
chr3 (211-252)||(771769-771810)
[»] chr2 (8 HSPs)
chr2 (198-372)||(33020043-33020217)
chr2 (198-259)||(33037881-33037942)
chr2 (333-369)||(7200134-7200170)
chr2 (332-372)||(33026518-33026558)
chr2 (321-372)||(33038004-33038055)
chr2 (198-251)||(33026384-33026437)
chr2 (284-373)||(34561064-34561158)
chr2 (551-600)||(36577366-36577415)
[»] chr5 (10 HSPs)
chr5 (537-600)||(11081813-11081876)
chr5 (535-600)||(23732167-23732232)
chr5 (535-600)||(23769632-23769697)
chr5 (535-600)||(23819480-23819545)
chr5 (541-600)||(23766854-23766913)
chr5 (541-600)||(23816702-23816761)
chr5 (196-249)||(20301165-20301218)
chr5 (196-249)||(20305578-20305631)
chr5 (196-249)||(20309982-20310035)
chr5 (535-600)||(23861012-23861077)
[»] chr6 (2 HSPs)
chr6 (551-645)||(24417488-24417582)
chr6 (196-254)||(24417748-24417806)
[»] scaffold0044 (1 HSPs)
scaffold0044 (335-373)||(89013-89051)
[»] chr1 (3 HSPs)
chr1 (333-371)||(51854806-51854844)
chr1 (333-363)||(51858465-51858495)
chr1 (551-600)||(25478865-25478914)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 445 - 856
Target Start/End: Original strand, 792800 - 793221
Alignment:
Q  445 tttagctctagacaccagcagcacttgttcatcttcgtaaatgtatgttgccttgttacagggatacaaaccaagatcttcagcattggcgaaaggaata 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  792800 tttagctctagacaccagcagcacttgttcatcttcgtaaatgtatgttgccttgttacagggatacaaaccaagatcttcagcattggcgaaaggaata 792899  T
Q  545 gtgaataatttactccaagattcttttttaccatactccttcataatccaaacatctataaacaactcaccgtgagcaaagatgcacaagcaatccctca 644  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  792900 gtgaataatttactccaagattcctctttaccatactccttcataatccaaacatctataaacaactcaccgtgagcaaagatgcacaagcaatccctca 792999  T
Q  645 acactcctaatgtcaagcacaccacatttaggtctccataatcaggttgaaaaatctcttgataagactcatcagccaaattaagtgaaacaacaaaaaa 744  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  793000 acactcctaatgtcaagcacaccacatttaggtctccataatcaggttgaaaaatctcttgataagactcattagccaaattaagtgaaacaacaaaaaa 793099  T
Q  745 caaagaattaaattcgctcccatccttagacgtaacccaattaatagcgccaccta----------cgaagattcaccaacaggaacaccagaagcacaa 834  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||          ||||||||||||||||||||||||||||||||||    
T  793100 caaagaattaaattcgcttccatccttagacgtaacccaattaatagcgccgcttacgaatgtccccgaagattcaccaacaggaacaccagaagcacaa 793199  T
Q  835 ggaaacattttaatccttctcc 856  Q
    ||||||||||||||||||||||    
T  793200 ggaaacattttaatccttctcc 793221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 145 - 408
Target Start/End: Complemental strand, 784176 - 783913
Alignment:
Q  145 gtaattataagattgttgccgtttcnnnnnnngaggtcaacaaatatggagttagtgtttatactttgggtactgattcttggaggaggatccaagactt 244  Q
    ||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  784176 gtaattataagattgttgctgtttctttttttgaggtcaacaaatatggagttagtgtttatactttgggtaccgattcttggaggaggatccaagactt 784077  T
Q  245 cccatattctggccccagtcctatgcctggagtctttgtgagtggcaccattaattggttgacctatgatgcaagtagttctttgcatgtcattgtttct 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  784076 cccatattctggccccagtcctatgcctggagtctttgtgagtggcaccattaattggttgacatatgatgcaagtagttctttgcatgtcattgtttct 783977  T
Q  345 cttgatttggagaatgagtcgtatcaaaatcttttcaagcctgatacgaagaaggattgttgga 408  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  783976 cttgatttggagaatgagtcgtatcaaaatcttttgaagcctgatacgaagaaggattattgga 783913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 445 - 659
Target Start/End: Complemental strand, 7434456 - 7434239
Alignment:
Q  445 tttagctctagacaccagcagcacttgttcatcttcgtaaatgtatgttgccttgttacagggatacaaaccaagatcttcagcattggcgaaaggaata 544  Q
    ||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||     
T  7434456 tttagctctagacaccagcagcagttgctcatcttcataaatatatgttgccttgttacatggataccaaccaagatcttcagcattggcgaaaagaatg 7434357  T
Q  545 gtgaataatttact-ccaagattcttttttaccatactccttcataatccaaacatctataaacaact--caccgtgagcaaagatgcacaagcaatccc 641  Q
    || |||||  |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||   ||| |||| ||| || |||||||||||||    
T  7434356 gtaaataacctactcccaagattcttttttaccataccccttcataatcaaaacatctataaacaacttataccttgagaaaatatccacaagcaatccc 7434257  T
Q  642 tcaacactcctaatgtca 659  Q
    ||||| | ||||||||||    
T  7434256 tcaactcacctaatgtca 7434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 187 - 379
Target Start/End: Complemental strand, 9587523 - 9587328
Alignment:
Q  187 aatatggagttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgag 286  Q
    ||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||  |  ||||  ||  || || || ||||||||    
T  9587523 aatatagagttagtgtttatactttgggtaccaatacttggaggaggatccaagacttcccatattctcacatcagtgataatccaggtgtatttgtgag 9587424  T
Q  287 tggcaccattaattggttgacctatgatg---caagtagttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaaatctttt 379  Q
    ||||||||||||||||||| | ||||||    |||||||   |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  9587423 tggcaccattaattggttgtcatatgatatttcaagtagacttttgaatgccattgtttctcttgatttggagaacgagtcgtatcaaaatctttt 9587328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 447 - 585
Target Start/End: Complemental strand, 761354 - 761212
Alignment:
Q  447 tagctctagacaccagcagcacttgttcatcttcgtaaatgtatgttgccttgttacagggatacaaaccaagatcttcagcattggcgaaaggaat--- 543  Q
    ||||| ||||||||| || ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||       
T  761354 tagctgtagacaccaacatcacttgttcatcttcataaatatatgtcgccttgttacagggatacaaaccaagatcttcagcatttgcaaaaggaatatt 761255  T
Q  544 -agtgaataatttactccaagattcttttttaccatactcctt 585  Q
     | ||||||||||| |  |||||| |||||| |||||||||||    
T  761254 gaatgaataatttattaaaagattttttttttccatactcctt 761212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 201 - 386
Target Start/End: Complemental strand, 763879 - 763697
Alignment:
Q  201 gtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgagtggcaccattaatt 300  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| ||||  || |  |   || ||||| ||||  || || ||||||||||    
T  763879 gtttatactctgggtacggattcttggaggaggatacaagacttaccatattatggctacattagtgaaccaggagtatttgctagaggtaccattaatt 763780  T
Q  301 ggttgacctatgatgcaagtagttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaaatcttttcaagcct 386  Q
    ||||| |  ||||    |||||||||| |||   |||||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  763779 ggttggcacatgag---agtagttcttcgcacaacattgtttctcttgatttggagaaggagtcgtatcaaaagcttttaaagcct 763697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 386
Target Start/End: Complemental strand, 9585451 - 9585271
Alignment:
Q  203 ttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgagtggcaccattaattgg 302  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||||   ||| ||| |  |      ||||| ||||  || || ||||||||||||    
T  9585451 ttatactttgggtacggattgttggaggaggatccaagacttaccatat---ggctccactagtgcagtaggagtatttgctagaggtaccattaattgg 9585355  T
Q  303 ttgacctatgatgcaagtagttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaaatcttttcaagcct 386  Q
    ||| | |||||| |    |||||||  |||  |||||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  9585354 ttggcatatgattctcagagttcttcacataacattgtttctcttgatttggagaaggagtcgtatcaaaagcttttgaagcct 9585271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 801 - 856
Target Start/End: Complemental strand, 760292 - 760237
Alignment:
Q  801 cgaagattcaccaacaggaacaccagaagcacaaggaaacattttaatccttctcc 856  Q
    ||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||    
T  760292 cgaagattcaccaacaggaacaccacaacgacaaggaaactttttaatccttctcc 760237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 771691 - 771649
Alignment:
Q  336 attgtttctcttgatttggagaatgagtcgtatcaaaatcttt 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  771691 attgtttctcttgatttggagaatgagtcatatcaaaatcttt 771649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 781120 - 781162
Alignment:
Q  84 cattcttgtatttcatatacttcaataattgccagttacaaaa 126  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  781120 cattcttgtatttcatatacttcaataattgtcagttacaaaa 781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 378
Target Start/End: Original strand, 43997282 - 43997472
Alignment:
Q  194 agttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgagtggcacc 293  Q
    ||||| |||| |||||||||||||| ||| ||||||||||||||| |||||||| ||||||    |||  |||   || || || ||||||||||| ||     
T  43997282 agttaatgttcatactttgggtactaattattggaggaggatccaggacttcccgtattctcaatccatacctggaccgggtgtatttgtgagtggtact 43997381  T
Q  294 attaattggttgacctatgatg---ca---agtagttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaaatcttt 378  Q
    |||||||||||||  |||||||   ||   ||| ||||||| |||| |||||||||||| ||| |||| |  |||||||||||||| ||||    
T  43997382 attaattggttgatatatgatgtttcaggtagttgttcttttcatgccattgtttctctcgatctggaaatagagtcgtatcaaaagcttt 43997472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 781085 - 781122
Alignment:
Q  14 caaagggaaagtgtggatttgtgatcctttgaggacat 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  781085 caaagggaaagtgtggatttgtgatcctttgaggacat 781122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 7942534 - 7942485
Alignment:
Q  551 aatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||||||||    
T  7942534 aatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 14888846 - 14888755
Alignment:
Q  291 accattaattggttgacctatgatg---caagtagttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaaatctttt 379  Q
    ||||||||||||||| | |||||||   ||||| | | |||| ||| |||| |||||||||||||||||||  |||||||||||||||||||    
T  14888846 accattaattggttggcatatgatgattcaagttgatttttgaatgccattttttctcttgatttggagaacaagtcgtatcaaaatctttt 14888755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 600
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  544 agtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| |||||| ||||||| ||||| || ||||||||||||||||||||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 537 - 600
Target Start/End: Original strand, 4142122 - 4142185
Alignment:
Q  537 aaggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    ||||||||||||| |||||| ||||||| ||||| || ||||| |||||||||| |||||||||    
T  4142122 aaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 9608681 - 9608626
Alignment:
Q  194 agttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccat 249  Q
    |||||||||| |||||||||| ||||||| |||||| ||||| |||||||||||||    
T  9608681 agttagtgttcatactttgggcactgattattggagaaggatacaagacttcccat 9608626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 44001332 - 44001443
Alignment:
Q  194 agttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgagtggcacc 293  Q
    |||||||||| ||| | ||||||||| || |||||||||||||||  |||||||||||||| |   ||  ||||  || ||||| ||||||||||||||     
T  44001332 agttagtgttcatagtatgggtactggttattggaggaggatccataacttcccatattctcgtagcatgcctagaccaggagtatttgtgagtggcact 44001431  T
Q  294 attaattggttg 305  Q
     |||||||||||    
T  44001432 gttaattggttg 44001443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 600
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  538 aggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||||||| | |||||| ||||||| ||||  || ||||||||||||||||||||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 600
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  538 aggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||||||| | |||||| ||||||| ||||  || ||||||||||||||||||||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 2686300 - 2686354
Alignment:
Q  537 aaggaatagtgaataatttactccaagattcttttttaccatactccttcataat 591  Q
    ||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||||    
T  2686300 aaggaatagtgaacaatttattccaagactctttttttccatattccttcataat 2686354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 651
Target Start/End: Complemental strand, 13498275 - 13498173
Alignment:
Q  549 ataatttactccaagattcttttttaccatactccttcataatccaaacatctataaacaactcaccgtgagcaaagatgcacaagcaatccctcaacac 648  Q
    |||||||| ||||||| ||||| || ||||| |||||||||||||||||||| | ||| |  |||   || | ||| ||||||||||||||| |||||||    
T  13498275 ataatttagtccaagactctttatttccatattccttcataatccaaacatccacaaagatatcattatgtgaaaatatgcacaagcaatccttcaacac 13498176  T
Q  649 tcc 651  Q
    |||    
T  13498175 tcc 13498173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 2696727 - 2696783
Alignment:
Q  544 agtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| |||||| ||||||| ||||| || ||||| ||||||||||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 956440 - 956381
Alignment:
Q  541 aatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||| |||| ||||||  |||||| |||||||| ||||| ||||||||||||||||||||    
T  956440 aataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 2491817 - 2491884
Alignment:
Q  194 agttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggcccca 261  Q
    ||||||||||||||||||||| ||||||| |||||  || ||| | ||| |||||||||||| |||||    
T  2491817 agttagtgtttatactttggggactgattattggacaagaatcaaggacatcccatattctgacccca 2491884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 2456106 - 2456148
Alignment:
Q  336 attgtttctcttgatttggagaatgagtcgtatcaaaatcttt 378  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  2456106 attgtttctcttgatttggagaaggagtcatatcaagatcttt 2456148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 37753347 - 37753405
Alignment:
Q  551 aatttactccaagattcttttttaccatactccttcataatccaaacatctataaacaa 609  Q
    |||||| ||||||| ||||| || ||||| |||| ||||||||||||||| ||||||||    
T  37753347 aatttagtccaagactctttctttccatattcctccataatccaaacatccataaacaa 37753405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 608
Target Start/End: Original strand, 754635 - 754668
Alignment:
Q  575 ccatactccttcataatccaaacatctataaaca 608  Q
    |||||||||||||||||||||||||| |||||||    
T  754635 ccatactccttcataatccaaacatccataaaca 754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 771810 - 771769
Alignment:
Q  211 tgggtactgattcttggaggaggatccaagacttcccatatt 252  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  771810 tgggtacagattcttggagaaggatacaagacttcccatatt 771769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 372
Target Start/End: Original strand, 33020043 - 33020217
Alignment:
Q  198 agtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccccagtcctatgcctggagtctttgtgagtggcaccatta 297  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | ||||||||||| || ||||||  ||| |  |  |||| | ||||||||||||||  |||    
T  33020043 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcacagtta 33020142  T
Q  298 attggttgacctatgatgcaagt-agttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaa 372  Q
    |||||||| | |  || | | || ||||||  |  ||||||||||||||||||||||||||| |||||||||||||    
T  33020143 attggttggcattcgaag-atgtgagttctccgtgtgtcattgtttctcttgatttggagaaggagtcgtatcaaa 33020217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 33037881 - 33037942
Alignment:
Q  198 agtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattctggccc 259  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||||||||||    
T  33037881 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggccc 33037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 7200170 - 7200134
Alignment:
Q  333 gtcattgtttctcttgatttggagaatgagtcgtatc 369  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7200170 gtcattgtttctcttgatttggagaatgagtcttatc 7200134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 33026518 - 33026558
Alignment:
Q  332 tgtcattgtttctcttgatttggagaatgagtcgtatcaaa 372  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  33026518 tgtcattgtttctcttgatttggagaaggagttgtatcaaa 33026558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 33038004 - 33038055
Alignment:
Q  321 agttctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaa 372  Q
    |||||||||   |||||||||||||||||||||||||| || ||||||||||    
T  33038004 agttctttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaaa 33038055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 33026384 - 33026437
Alignment:
Q  198 agtgtttatactttgggtactgattcttggaggaggatccaagacttcccatat 251  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||    
T  33026384 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 33026437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 34561158 - 34561064
Alignment:
Q  284 gagtggcaccattaattggttgacctatgatg---caagtagt--tctttgcatgtcattgtttctcttgatttggagaatgagtcgtatcaaaa 373  Q
    ||||||| || ||||||||||||| |||||||   | ||||||  ||||||||||  |||| ||| ||||||||||| || ||||||||||||||    
T  34561158 gagtggcgccgttaattggttgacatatgatgtttcgagtagttctctttgcatgctattgcttcccttgatttggataaagagtcgtatcaaaa 34561064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 36577415 - 36577366
Alignment:
Q  551 aatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| ||||||| ||||| || ||||| ||||||||||||||||||||    
T  36577415 aatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 537 - 600
Target Start/End: Complemental strand, 11081876 - 11081813
Alignment:
Q  537 aaggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||||||| || |||||| ||||||| ||||| || |||||||||||||||| |||||||||    
T  11081876 aaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 600
Target Start/End: Complemental strand, 23732232 - 23732167
Alignment:
Q  535 gaaaggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    ||||||||||||||| | |||| |||||||  |||| || ||||| ||||||||||||||||||||    
T  23732232 gaaaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatc 23732167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 23769632 - 23769697
Alignment:
Q  535 gaaaggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| |||||||| |||||| |||||||  |||| || ||||| ||||||||||||||||||||    
T  23769632 gaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23769697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 23819480 - 23819545
Alignment:
Q  535 gaaaggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| |||||||| |||||| |||||||  |||| || ||||| ||||||||||||||||||||    
T  23819480 gaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 23766854 - 23766913
Alignment:
Q  541 aatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    ||||||||| |||||| ||||||| ||||| || ||||| || |||||||||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 23816702 - 23816761
Alignment:
Q  541 aatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    ||||||||| |||||| ||||||| ||||| || ||||| || |||||||||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 20301165 - 20301218
Alignment:
Q  196 ttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccat 249  Q
    |||||||| |||||||||||||||| | |||||| ||||| |||||||| ||||    
T  20301165 ttagtgttcatactttgggtactgaatattggagaaggatacaagactttccat 20301218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 20305578 - 20305631
Alignment:
Q  196 ttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccat 249  Q
    |||||||| |||||||||||||||| | |||||| ||||| |||||||| ||||    
T  20305578 ttagtgttcatactttgggtactgaatattggagaaggatacaagactttccat 20305631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 20309982 - 20310035
Alignment:
Q  196 ttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccat 249  Q
    |||||||| |||||||||||||||| | |||||| ||||| |||||||| ||||    
T  20309982 ttagtgttcatactttgggtactgaatattggagaaggatacaagactttccat 20310035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 23861012 - 23861077
Alignment:
Q  535 gaaaggaatagtgaataatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    ||||||||||||||| |||||| |||||||  ||||  | ||||| |||||||| |||||||||||    
T  23861012 gaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 23861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 645
Target Start/End: Original strand, 24417488 - 24417582
Alignment:
Q  551 aatttactccaagattcttttttaccatactccttcataatccaaacatctataaacaactcaccgtgagcaaagatgcacaagcaatccctcaa 645  Q
    |||||| ||||||||||||| || ||||| || |||||||||||||||| || |||||  ||||||   | || ||||||||| |||||||||||    
T  24417488 aatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaa 24417582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 24417806 - 24417748
Alignment:
Q  196 ttagtgtttatactttgggtactgattcttggaggaggatccaagacttcccatattct 254  Q
    |||||||| ||||  ||||||| ||||||||||| | ||| ||||||||||||||||||    
T  24417806 ttagtgttcataccctgggtacagattcttggagaacgatacaagacttcccatattct 24417748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 89013 - 89051
Alignment:
Q  335 cattgtttctcttgatttggagaatgagtcgtatcaaaa 373  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  89013 cattgtttcacttgatttggagaatgagtcgtataaaaa 89051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 51854806 - 51854844
Alignment:
Q  333 gtcattgtttctcttgatttggagaatgagtcgtatcaa 371  Q
    |||||||||||||||||||||||||||| || |||||||    
T  51854806 gtcattgtttctcttgatttggagaatgggttgtatcaa 51854844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 333 - 363
Target Start/End: Original strand, 51858465 - 51858495
Alignment:
Q  333 gtcattgtttctcttgatttggagaatgagt 363  Q
    |||||||||||||||||||||||||||||||    
T  51858465 gtcattgtttctcttgatttggagaatgagt 51858495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 25478914 - 25478865
Alignment:
Q  551 aatttactccaagattcttttttaccatactccttcataatccaaacatc 600  Q
    |||||| ||||||||||||| ||||| || |||||||||| |||||||||    
T  25478914 aatttaatccaagattctttattaccgtattccttcataagccaaacatc 25478865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University