View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_14 (Length: 474)
Name: NF20985_high_14
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_14 |
 | |
|
| [»] scaffold0932 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 17148704 - 17149147
Alignment:
| Q |
20 |
tgcatttccttagccttctcaattgccatcatgcaagcagaaaattcagcctctagagcagaagcatatccaatgttgctagatattgccccaataaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17148704 |
tgcatttccttagccttctcaattgccatcatgcaagcagaaaattcagcctctagagcataagcatatccaatgttgctagatattgccccaataaaag |
17148803 |
T |
|
| Q |
120 |
aggcagagtttctaatcacaatcccaacagcaccacagggctgcgctcccatagaagagccatcacaattgaatttaatcagatcattgacaggagggca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17148804 |
aggcagagtttctaatcacaatcccaacagcaccacagggctgcgctcccatagaagaggcgtcacaattgaatttaatcagatcattgacaggagggca |
17148903 |
T |
|
| Q |
220 |
ccaatgaaccaattgcctaactgttattctcttagtctgcagagggatggaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagct |
319 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17148904 |
ccaatgaaccaattgcctaatttttattctcttagtctgcaaagggatggaaaaaagcctagagatgttgtagtctttcatgtcagagttacctttagct |
17149003 |
T |
|
| Q |
320 |
aaaaccaaatgatagctaattttaacctccgccaaaatacagttgaacagggaagccatgtgccgaattttgttatgaaaacatctctgattccgctcca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17149004 |
aaaaccaaatgatagctaattttaacctccgccaaaatacagttgaacagggaagccatgtgccgaattttgttatgaaaacatctctgattccgctcca |
17149103 |
T |
|
| Q |
420 |
tccaaatgatccatatagtgtgaatgatggcagagttcagaata |
463 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17149104 |
tccagatgatccatatagtgtgaatgatggcagagttcaaaata |
17149147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 28789905 - 28789550
Alignment:
| Q |
20 |
tgcatttccttagccttctcaattgccatcatgcaagcagaaaattcagcctctagagcagaagcatatccaatgttgctagatattgccccaataaaag |
119 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
28789905 |
tgcatctccttggccttctcaattgccatcatgcaagcagaaaattcagcctcaagagcagaagcatatccaatgttgctagatatggccccaataaatg |
28789806 |
T |
|
| Q |
120 |
aggcagagtttctaatcacaatcccaacagcaccacagggctgcgctcccatagaagagccatcacaattgaatttaatcagatcattgacaggagggca |
219 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
28789805 |
aagcagagtttctaatcactatcccaacagcaccacagggctgcgctcctatagaagagccatcacagttgaatttaatcagttcattggcaggagggca |
28789706 |
T |
|
| Q |
220 |
ccaatgaaccaattgcctaactgttattctcttagtctgcagagggatggaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagct |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
28789705 |
ccaatgaaccagttgcctaactgttattctcttactctagagagggatggaaaaaagcctagagatgttgtagtctttcatgtcagagttaccttaagcc |
28789606 |
T |
|
| Q |
320 |
aaaaccaaatgatagctaattttaacctccgccaaaatacagttgaacagggaagc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
28789605 |
aaaaccaaatgatagctaattttaacctccgccagaatatagttgaacagggaagc |
28789550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0932 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0932
Description:
Target: scaffold0932; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 369
Target Start/End: Original strand, 1779 - 2122
Alignment:
| Q |
26 |
tccttagccttctcaattgccatcatgcaagcagaaaattcagcctctagagcagaagcatatccaatgttgctagatattgccccaataaaagaggcag |
125 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |||||||||||| || |||| | |||||||||||||||||| |||| ||||||| ||| || | | |
|
|
| T |
1779 |
tccttggccttctcaattgctctcatgcaagtagaaaattcagcttcaagagttgtggcatatccaatgttgctacatatggccccaagaaaggaagtgg |
1878 |
T |
|
| Q |
126 |
agtttctaatcacaatcccaacagcaccacagggctgcgctcccatagaagagccatcacaattgaatttaatcagatcattgacaggagggcaccaatg |
225 |
Q |
| |
|
| || || ||||| || | ||| ||||| |||||| ||| ||||| || |||||||| |||||||| ||| |||| | |||||| |||||||| |
|
|
| T |
1879 |
gagtcctgataacaattcctatagcgccacaaggctgcattcctatagaggatccatcacagttgaattttgtcatttcatggggaggaggacaccaatg |
1978 |
T |
|
| Q |
226 |
aaccaattgcctaactgttattctcttagtctgcagagggatggaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagctaaaacc |
325 |
Q |
| |
|
||| || ||||||||||| ||||| || || | || || ||||||||| ||||| ||||| |||||||| |||||||| | |||||| || ||| |
|
|
| T |
1979 |
aacatcttttctaactgttatcctcttggtttggaatggtatattaaaaagccttgagattttgtaatctttcatatcagagttgcatttagccaagacc |
2078 |
T |
|
| Q |
326 |
aaatgatagctaattttaacctccgccaaaatacagttgaacag |
369 |
Q |
| |
|
||| ||| |||| |||||||| | |||||||||||| ||||| |
|
|
| T |
2079 |
aaagtataactaagcttaacctcagacaaaatacagttaaacag |
2122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University