View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_17 (Length: 428)
Name: NF20985_high_17
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 13009291 - 13009641
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009291 |
gtcgaagaagagggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
13009390 |
T |
|
| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009391 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattggatcctttgg |
13009490 |
T |
|
| Q |
206 |
aaagacaagttagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattctgttgcttgaaagtaattaaaacattagatttagatgcc |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
13009491 |
aaagacaagttagagaagtatttcatagaattgttcgtggtagaatggaagggcttgattctgtttcttaaaagtaattaaaacattagatttagatgcc |
13009590 |
T |
|
| Q |
306 |
ataaacttgatggaacaaccataaaagatataggtatatgtaaaaggatgg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009591 |
ataaacttgatggaacaaccataaaagatataggtatatgtaaaaggatgg |
13009641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 12976892 - 12977220
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12976892 |
gtcgaagaagagggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
12976991 |
T |
|
| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12976992 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattggatcctttgg |
12977091 |
T |
|
| Q |
206 |
aaagacaagttagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattctgttgcttgaaagtaattaaaacattagatttagatgcc |
305 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
12977092 |
aaatacaagtcagagaagtgtttcatagaattgttcatggtagaatggaagggcttgattctcttgcttgagagtaataaaaacattagatttagatgcc |
12977191 |
T |
|
| Q |
306 |
ataaacttgatggaacaaccataaaagat |
334 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
12977192 |
ataaacttgatggaataaccataaaagat |
12977220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 13012849 - 13013182
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13012849 |
gtcgaagaagagggagatgaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctgtg |
13012948 |
T |
|
| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttgg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
13012949 |
gaatttcctttgagtgaagagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttcg |
13013048 |
T |
|
| Q |
206 |
aaagacaagttagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattct-gttgcttgaaagtaattaaaacattagatttagatgc |
304 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
13013049 |
taatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattgtctttgcttgagagtaataaaaacattagatttagatgc |
13013148 |
T |
|
| Q |
305 |
cataaacttgatggaacaaccataaaagatatag |
338 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| |
|
|
| T |
13013149 |
cataatcttgatggaataaccataaaagatatag |
13013182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 13031649 - 13031941
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13031649 |
gtcgaagaagagggagatgaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaatgaactggctgattctttg |
13031748 |
T |
|
| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttgg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031749 |
cggtttcctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttgg |
13031848 |
T |
|
| Q |
206 |
aaagacaagttagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattctgttgcttgaaagtaattaaaacattagattt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || | |||||| ||||||| |||||| |
|
|
| T |
13031849 |
aaagacaagttagagaagtgtttcatagaattgtttgtggtagaatggaagggcttgattcctttggttcagagtaataaaaacataagattt |
13031941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 13009672 - 13009706
Alignment:
| Q |
377 |
atccatttaacatacataaaatgtatagagtttgt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13009672 |
atccatttaacatacataaaatgtatagagtttgt |
13009706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University