View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_high_18 (Length: 424)
Name: NF20985_high_18
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 28491810 - 28492201
Alignment:
| Q |
17 |
caagaactaacacgatgcatttcagaaacacccgagtcctttttgtagaaaacttctgcgttcttcttaatctcaaagtatttgtatgccactgtagtct |
116 |
Q |
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| T |
28491810 |
caagaactaacacgatgcatttcagaaacacctgagtcctttttggagaaaacttccgcgttcttcttaatctcaaagtatttgtatgccactgtagtat |
28491909 |
T |
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| Q |
117 |
taaatggaatccacggtggtggagccgtgtagtcctccagctttgttcgaggatttttctctttacccgtaagaactgaaatggggcctaagaaggcaag |
216 |
Q |
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| T |
28491910 |
taaatggaatccacggtggtggagccgtgtagtcctccagctttgttcgaggatctttctctttacccgtaagaactgaaatggggcctaagaaggcaag |
28492009 |
T |
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| Q |
217 |
atttggcggagtagtagtgttgnnnnnnncacattttataccaaattttgttgccacaggacccagccaaaaaggagcaaaatcatgcaagatccaatca |
316 |
Q |
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| T |
28492010 |
atttggcggagtagtaatgttgaaaaaaacacattttataccaatttttgttgccacaggacccaaccaaaaaggagcaaaatcatgcaagatccaatca |
28492109 |
T |
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| Q |
317 |
gcatcagaagattcaagaaaattggtcaaaggttgttccagcttgtcaaatgcatctttaaggtagtgaaatacatcccatgaaacatctgt |
408 |
Q |
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| T |
28492110 |
gcatcagaagattcaagaaaattggtcaaaggttgttccagcttgtcaaatgcatctttaaggtattgaaatacatcccatgagacatctgt |
28492201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 380
Target Start/End: Original strand, 28495358 - 28495492
Alignment:
| Q |
246 |
cacattttataccaaattttgttgccacaggacccagccaaaaaggagcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaa |
345 |
Q |
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| T |
28495358 |
cacattttatacctaattggggtgccacagaacccaaccaaaaaggaacaaaatcatgcaaaatccaatcagcattagaagattgaaggaaatgagttaa |
28495457 |
T |
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| Q |
346 |
aggttgttccagcttgtcaaatgcatctttaaggt |
380 |
Q |
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| T |
28495458 |
aggttgttcaagtttgtcaaaggcatttttcaggt |
28495492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 28507947 - 28508036
Alignment:
| Q |
292 |
agcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaaaggttgttccagcttgtcaaatgcatctttaaggta |
381 |
Q |
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| T |
28507947 |
agcaaaatcatgaaaaatccaaccagcattagaagtttcaaggaaatgggtgaaaggtttttcaagtttgtcaaaggcatttttaaggta |
28508036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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