View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_21 (Length: 398)
Name: NF20985_high_21
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 43583186 - 43583567
Alignment:
| Q |
1 |
gctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583186 |
gctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaa |
43583285 |
T |
|
| Q |
101 |
atttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaactcccttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583286 |
atttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctccctcaccaaagggaggatgctgtgaactcccttgct |
43583385 |
T |
|
| Q |
201 |
tacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583386 |
tatgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacg |
43583485 |
T |
|
| Q |
301 |
ctgccaacaccgatcttcttcgctattccctcgctgatatctctccacctcctccagcatctctttctgtacctcaaggaat |
382 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583486 |
ctgctaacaccgatcttcttcgctattccctcgctgatatctctccacctcctccagcatctctttctgtacctcaaggaat |
43583567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 32513188 - 32513111
Alignment:
| Q |
64 |
tctttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtca |
141 |
Q |
| |
|
||||||| |||||||||||| | || |||||||| |||||||| || || |||||| | ||||||||||||||||||| |
|
|
| T |
32513188 |
tctttgctccttacttccctgctgatgagcctcacaaatttgctaatgttcacaaagtctttggtgctagcaatgtca |
32513111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 34675197 - 34675520
Alignment:
| Q |
1 |
gctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| | | |||||||||||||||| |||||||||||||| ||||| || || ||||| |||||||| |
|
|
| T |
34675197 |
gctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaa |
34675296 |
T |
|
| Q |
101 |
atttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaactcccttgct |
200 |
Q |
| |
|
|||||||||||| ||||| || || || || ||||| ||||||||| | ||||| ||||||||||||||||| || || ||||| ||||| ||||||||| |
|
|
| T |
34675297 |
atttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgct |
34675396 |
T |
|
| Q |
201 |
tacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacg |
300 |
Q |
| |
|
|| |||||||| ||||| || || ||||| |||||||| ||||| || || |||||||| || || ||||||||||| || |||||||||||||| || |
|
|
| T |
34675397 |
tatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgatt |
34675496 |
T |
|
| Q |
301 |
ctgccaacaccgatcttcttcgct |
324 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
34675497 |
ctgctaatgccgatcttcttcgct |
34675520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 12360900 - 12360614
Alignment:
| Q |
9 |
aattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaaatttgcaa |
108 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| || || |||||||||| ||||| ||||| || || ||||| |||||||| || ||||||||||||| |
|
|
| T |
12360900 |
aattcaccatgtgctgcttgcaagtttttgagaaggaagtgcatgccagattgcatatttgctccatatttcccaccagaagaaccacaaaaatttgcaa |
12360801 |
T |
|
| Q |
109 |
acgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaactcccttgcttacgaagc |
208 |
Q |
| |
|
| || ||||||||||||||||| |||||||| | || ||||| |||||| | | || || |||||||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
12360800 |
atgttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaactctcttgcttatgaagc |
12360701 |
T |
|
| Q |
209 |
cgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaact |
295 |
Q |
| |
|
|| ||| | | | |||||||||||||| || || || ||||| || | || |||||||||||| ||||| ||||||||||| |
|
|
| T |
12360700 |
tgaggcaaggataaaagatccagtttatggttgcgtcggtgccatttcagtcctccaaagacaagttattaggctccaaaaggaact |
12360614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 298
Target Start/End: Original strand, 591173 - 591411
Alignment:
| Q |
60 |
tgcatctttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaac |
159 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| || |||||||| || ||||||||||||||||| || ||||| | || |||| |||||| |
|
|
| T |
591173 |
tgcatttttgcaccttatttcccaccagaagagcctcataagtttgcaaatgttcacaaaatatttggtgcaagtaatgttagcaaaattctaaatgaag |
591272 |
T |
|
| Q |
160 |
tcctccctcaccaaagggaggatgctgtgaactcccttgcttacgaagccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttt |
259 |
Q |
| |
|
| | || || ||||| || ||| | ||||| || || ||||| ||||| |||||| | ||| |||||||| ||||| ||||| ||||| || ||| | |
|
|
| T |
591273 |
ttttaccccatcaaagagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatggttgtgttggagctatatctgt |
591372 |
T |
|
| Q |
260 |
tctacaaagacaagttcaaaggcttcaaaaggaactcga |
298 |
Q |
| |
|
|| ||||||||| | | | |||||||||||||||||| |
|
|
| T |
591373 |
gcttcaaagacaactccttaagcttcaaaaggaactcga |
591411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 600699 - 600829
Alignment:
| Q |
9 |
aattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaaatttgcaa |
108 |
Q |
| |
|
||||| || |||||||| ||||| ||| | || |||||||||| | || ||||| ||||||||||| ||||| |||||||||||||| ||||||| | |
|
|
| T |
600699 |
aattctccatgtgctgcttgcaagttcctaagaagaaaatgcaaccaagattgcatttttgcaccttatttcccaccagaagagcctcataaatttgtca |
600798 |
T |
|
| Q |
109 |
acgtgcacaaaatatttggtgctagcaatgt |
139 |
Q |
| |
|
| || ||||||||||||||||| |||||||| |
|
|
| T |
600799 |
atgttcacaaaatatttggtgcaagcaatgt |
600829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 15262643 - 15262785
Alignment:
| Q |
66 |
tttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaactcctcc |
165 |
Q |
| |
|
||||||||||| || || || || |||| |||||||||||||| || || | ||| ||||| || |||||||| ||||||||||||||||| | | || |
|
|
| T |
15262643 |
tttgcaccttattttccacctgatcagccacaaaaatttgcaaatgttcatagaatttttggagcaagcaatgttacaaagcttctcaatgatttacacc |
15262742 |
T |
|
| Q |
166 |
ctcaccaaagggaggatgctgtgaactcccttgcttacgaagc |
208 |
Q |
| |
|
|||||||| | || ||||||||||| || |||||||| ||||| |
|
|
| T |
15262743 |
ctcaccaacgtgaagatgctgtgaattcacttgcttatgaagc |
15262785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University