View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_22 (Length: 393)
Name: NF20985_high_22
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 15608633 - 15608992
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttctattgaaaatgcctaatctgtaacactagatattgataaagttgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
15608633 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttcgattgaaaatgcctaacctgcaacactagatattgatacagttgca |
15608732 |
T |
|
| Q |
116 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15608733 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtagcgatatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcat |
15608832 |
T |
|
| Q |
216 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatgnnn |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15608833 |
tttgtttttggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatg-tt |
15608931 |
T |
|
| Q |
316 |
nnnnnnngctttgacattttatgtgggatatggttatattaattgtttatctttgatgttc |
376 |
Q |
| |
|
||||||||||||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15608932 |
tttttttgctttgacattttttatgggatatggttgtgttaattgtttatctttgatgttc |
15608992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 15628656 - 15629016
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttctattgaaaatgcctaatctgtaacactagatattgataaagttgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15628656 |
atgatcacctagttttaattgaaaatacgtaattgaatagcgtggctttgtttcgattgaaaatgcctaacctgtaacactagatattgataa-gttgca |
15628754 |
T |
|
| Q |
116 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15628755 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacggtatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcat |
15628854 |
T |
|
| Q |
216 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatgnnn |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15628855 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgagaacacttcttggtatgatgttt |
15628954 |
T |
|
| Q |
316 |
nnnnnnngctttgacattttatgtgggatatggttatattaattgtttatctttgatgttct |
377 |
Q |
| |
|
||||||||||||| | |||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
15628955 |
ttattttgctttgacattttttatgggatatggctgtgttaattgtttatctttgatgttct |
15629016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 15650507 - 15650803
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttctattgaaaatgcctaatctgtaacactagatattgataaagttgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
15650507 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttcgattgaaaatgcctaacctgtaacactagatattgatacagttgca |
15650606 |
T |
|
| Q |
116 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15650607 |
ttaaattttccagatcttgtgtcctccttattcagaaatgagtaacgatatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcat |
15650706 |
T |
|
| Q |
216 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15650707 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattccattggatgaaaacacttcttggtatgatg |
15650803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 15626744 - 15627039
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttctattgaaaatgcctaatctgtaacactagatattgataaagttgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15626744 |
atgatcacctagttttaattgaaaatacgtaattgaatagcgtggctttgtttcgattgaaaatgcctaacctgtaacactagatattgataa-gttgca |
15626842 |
T |
|
| Q |
116 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15626843 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacggtatttttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcat |
15626942 |
T |
|
| Q |
216 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15626943 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattccattggatgaaaacacttcttggtatgatg |
15627039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 15652498 - 15652860
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttctattgaaaatgcctaatctgtaacactagatattgataaagttgca |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
15652498 |
atgatcacctagttttaattgaaactacctaattgaatagcgtggctttgtttcgattgaaaatgcctaacctgtaacactagatattgatacagttgca |
15652597 |
T |
|
| Q |
116 |
ttaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcat |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15652598 |
ttaaattttccagatcttgtgtcctgcttattcacaaatgagtaacgatatttttgatactatgtccaatgatcaaaaaattaatgcaaacttacttcat |
15652697 |
T |
|
| Q |
216 |
tttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatg-nn |
314 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15652698 |
tttgttttgggttaaacatgatatttttcgattcaatgtgttttctctatctataattaactaattgcattggatgaaaacacttcttggtatgatgttt |
15652797 |
T |
|
| Q |
315 |
nnnnnnnngctttgacattttatgtgggatatggttatattaattgtttatctttgatgttct |
377 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
15652798 |
ttttttttgctttgacatttttgatgggatatggttgtgttaattgtttatctttgatgttct |
15652860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 144 - 377
Target Start/End: Original strand, 15640324 - 15640557
Alignment:
| Q |
144 |
tattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatattttt |
243 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15640324 |
tattcccaaatgagtaacgattttcttgaaactatgtccaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatattttt |
15640423 |
T |
|
| Q |
244 |
ggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnngctttgacattttatgtggga |
343 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
15640424 |
ggattcaatatgttttctctgtctataagtaactaattgcattggatgaaaacacttcttggtatgatgttttttttttgctttgacattttttatggga |
15640523 |
T |
|
| Q |
344 |
tatggttatattaattgtttatctttgatgttct |
377 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |
|
|
| T |
15640524 |
tatggttgtgttaattgtttatctttgatgttct |
15640557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 144 - 377
Target Start/End: Original strand, 15617146 - 15617379
Alignment:
| Q |
144 |
tattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatattttt |
243 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15617146 |
tattcccaaatgagtaacgattttcttgaaactatgtccaatgataaaaaaattaatgcaaacttactttattttgttttgggataaacatgatattttt |
15617245 |
T |
|
| Q |
244 |
ggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnngctttgacattttatgtggga |
343 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |
|
|
| T |
15617246 |
ggattcaatatgttttctctgtctataagtaactaattgcattggatgaaaacacttcttggtatgatgttttttttttgcattgacattttttatggga |
15617345 |
T |
|
| Q |
344 |
tatggttatattaattgtttatctttgatgttct |
377 |
Q |
| |
|
||| | | | |||||||||||||||||||||||| |
|
|
| T |
15617346 |
tattggtgtgttaattgtttatctttgatgttct |
15617379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 76 - 377
Target Start/End: Complemental strand, 15971659 - 15971362
Alignment:
| Q |
76 |
aaatgcctaatctgtaacactagatattgataaagttgcattaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaac |
175 |
Q |
| |
|
||||||||||||| || |||| |||||||||| ||| ||||||||||||||||||| | ||| |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
15971659 |
aaatgcctaatctatatcact-gatattgatacagtcacattaaattttccagatctcgcgtcttccttattcacaaatgagtaacaatatttttgaaac |
15971561 |
T |
|
| Q |
176 |
tatgtcgaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaa |
275 |
Q |
| |
|
||| || | ||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
15971560 |
tatatccagtgatccaaaaattaatgcaaacttacttaattttgtgctggcataaacatgatatttttgttttcaatgtgttttctttgtctataattaa |
15971461 |
T |
|
| Q |
276 |
ctaattgcattggatgaaaacacttcttggtatgatgnnnnnnnnnngctttgacattttatgtgggatatggttatattaattgtttatctttgatgtt |
375 |
Q |
| |
|
|||||| ||| || |||||||| ||||||||||| | ||||||||| | |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
15971460 |
ctaattatattaaatagaaacactttttggtatgatg---tttttttgttttgacattgtttgtgggatatggttgtgttaattgtttatctttgatgtt |
15971364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 99 - 377
Target Start/End: Complemental strand, 12068034 - 12067761
Alignment:
| Q |
99 |
atattgataaagttgcattaaattttccagatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaatta |
198 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||| |||||||||| ||||||||| |||| ||||||||| || || ||||||| ||| |||| |
|
|
| T |
12068034 |
atattgatacagtcacattaaattttccagatattgtgtcttccttattcagaaatgagtatggatatttttgaaaccatttccaatgatccaaatatta |
12067935 |
T |
|
| Q |
199 |
atgcaaacttacttcattttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgcattggatgaaaacac |
298 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
12067934 |
atgcaaacttacttcatcttgttttgggataaaaatgatattttttgattc--tgtgttttctctgtcaattattaatgaattgcattggatggaaacac |
12067837 |
T |
|
| Q |
299 |
ttcttggtatgatgnnnnnnnnnngctttgacattttatgtgggatatggttatattaattgtttatctttgatgttct |
377 |
Q |
| |
|
||||||||||| || ||||||||| ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
12067836 |
ttcttggtatgttg---tttttttgctttgacaatttttatgggatatggttgtggtaattgtttatctttgatgttct |
12067761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 15990376 - 15990232
Alignment:
| Q |
127 |
agatcttgtgtcctccttattcacaaatgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcattttgttttggg |
226 |
Q |
| |
|
||||||||| || |||||||||| || |||||||| ||| |||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15990376 |
agatcttgtatcttccttattcaaaagtgagtaacaatatttttgaaactgtatccaatgatccaaaaattaatgcaaacttacttcattttgttttggg |
15990277 |
T |
|
| Q |
227 |
ataaacatgatatttttggattcaatgtgttttctctgtctataa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15990276 |
ataaacatgatatttttggattcaatgtgtttcctttgtctataa |
15990232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 12063316 - 12063176
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaattgaatagcgtggctttgtttctattgaaaatgcctaatctgtaacactagatattgataaagttgca |
115 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| |||||||||| || |||| ||||||||||||| |||||||||||||| ||| ||| || |
|
|
| T |
12063316 |
atgatcacctagtttcaattgaaaatagctaattgaatagtgtggctttgtatcaattggaaatgcctaatctataacactagatatttatacagtcaca |
12063217 |
T |
|
| Q |
116 |
ttaaattttccagatcttgtgtcctccttattcacaaatga |
156 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
12063216 |
ttaaattttccagatcttgtgtcttgcttattcacaaatga |
12063176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 12063171 - 12063056
Alignment:
| Q |
185 |
tgatcaaaaaattaatgcaaacttacttcattttgttttgggataaacatgatatttttggattcaatgtgttttctctgtctataattaactaattgca |
284 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||| || |
|
|
| T |
12063171 |
tgatccaaaaattaatgcagacttacttcattttgttttgggataaacatgatatttttggattcaatgtgctttgtttgtctataattaacttattaca |
12063072 |
T |
|
| Q |
285 |
ttggatgaaaacactt |
300 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
12063071 |
ttggatggaaacactt |
12063056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 15990160 - 15990106
Alignment:
| Q |
323 |
gctttgacattttatgtgggatatggttatattaattgtttatctttgatgttct |
377 |
Q |
| |
|
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|
|
| T |
15990160 |
gctttgacattgtttgtgagatatggttatgttaattgtttatctttgatgttct |
15990106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 12138814 - 12138893
Alignment:
| Q |
153 |
atgagtaacgataattttgaaactatgtcgaatgatcaaaaaattaatgcaaacttacttcattttgttttgggataaac |
232 |
Q |
| |
|
||||| ||||||| ||||||||||| || ||||||| ||| |||| ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
12138814 |
atgagcaacgatatttttgaaactacatccaatgatccaaatattactgctaacttgcttcattttgttttaggataaac |
12138893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 15995184 - 15995107
Alignment:
| Q |
71 |
attgaaaatgcctaatctgta--acactagatattgataaagttgcattaaattttccagatcttgtgtcctccttat |
146 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||| ||| || ||||||||| ||||||||| || ||||||| |
|
|
| T |
15995184 |
attgaaaatgcctaatctctataacacaagatattgatacagtcacaataaattttcaagatcttgtatcttccttat |
15995107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 12068070 - 12068038
Alignment:
| Q |
16 |
atgatcacctagttttaattgaaaatacctaat |
48 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
12068070 |
atgatcacctagtttcaattgaaaatacctaat |
12068038 |
T |
|
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