View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_27 (Length: 368)
Name: NF20985_high_27
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 36262541 - 36262182
Alignment:
| Q |
1 |
aagagagtaaatcaataccaacaaagttagtccccaaacaattgcaatcccaggaagtgttaccacgttgtcgttgtccttgttcactactattgatgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262541 |
aagagagtaaatcaataccaacaaagttagtccccaaacaattgcaatccctggaagtgttactacgttgtcgttgtccttgttcactactattgatgca |
36262442 |
T |
|
| Q |
101 |
catcctgcaaatatcaagaaatatgtgcccaccatttctgctattaactgtaatcaccaccaaacaaaacctaattaattcaatatatactatatgatca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262441 |
catcctgcaaatattaagaaatatgtgcccaccatttctgctattaactgtattcaccaacaaacaaaacctaattaattcaatatatactatatgatca |
36262342 |
T |
|
| Q |
201 |
aaatcttatattagttcagaaa-gaaac--------tatgtaactatatgtgtacgtatgatgagtttgtaaaggaaagattaggagacaccttttgcaa |
291 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262341 |
aaatcttatattagttcagaaacgtaacaaactatatatgtaactatatgtgtacgtatgatgagtttgtaaaggaaagattaggagacaccttttgcaa |
36262242 |
T |
|
| Q |
292 |
gaaagggacagagacaaaggagccagagcctttacatgtatctgaggaatccttgtttgt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36262241 |
gaaagggacagagacaaaggagccagagcctttacatgtatctgaggaatccttgtttgt |
36262182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36267702 - 36267574
Alignment:
| Q |
1 |
aagagagtaaatcaataccaacaaagttagtccccaaacaattgcaatcccaggaagtgttaccacgttgtcgttgtccttgttcactactattgatgca |
100 |
Q |
| |
|
||||||||||| || |||| || || |||||||||||||||| ||| |||||||||||||| || || || |||| ||||||||| | | || ||| |
|
|
| T |
36267702 |
aagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattccaggaagtgttacaacattttcattgttcttgttcaccaacaccgaagca |
36267603 |
T |
|
| Q |
101 |
catcctgcaaatatcaagaaatatgtgcc |
129 |
Q |
| |
|
|| || ||||||||||||||||||||||| |
|
|
| T |
36267602 |
caaccggcaaatatcaagaaatatgtgcc |
36267574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University