View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_30 (Length: 343)
Name: NF20985_high_30
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1578120 - 1577784
Alignment:
| Q |
1 |
agtatgcttcaacaaagcgtttctttgtgtaattttagttacaaaaatcaaataagattgtgccattgatgttttctcaatttaattttttaatcttgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1578120 |
agtatgcttcaacaaagcgtttctttgtgtaattttagttacaaaaatcaaataagattatgccattgatgttttctcaatttatttttttaatcttgga |
1578021 |
T |
|
| Q |
101 |
cattgatgtatgggggattaagagcattcaattagtgagtgattactagttactactttaaatgaaatgttatagctcacctaattcctttccatgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1578020 |
cattgatgtatgggggattaagagcattcaattagtgagtgattactagttactactttaaatgaaatgttatagctcacctaattcctttccatgtatt |
1577921 |
T |
|
| Q |
201 |
cccctccttcccaaagtttgatgctttcagtttctttttgccctaccccccaaacaatccttgttgtgatcagtgttgtgaatcatggatcacaaaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1577920 |
cccctccttcccaaagtttgatgctttcagtttctttttgccctaccccccaaacaatccttgttgtgatcagtgttgtgaatcatggatcacaaaaaat |
1577821 |
T |
|
| Q |
301 |
agtagtttgtttaaaaactgttattctcctatgctac |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1577820 |
tgtagtttgtttaaaaactgttattctcctatgctac |
1577784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University