View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_high_4 (Length: 624)
Name: NF20985_high_4
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 609
Target Start/End: Complemental strand, 22395695 - 22395102
Alignment:
| Q |
16 |
atttcctctttgtggaatggttgaaatgctccaccgtttctcttcacttctacgacatttgttttcctaggtacatcctgaacaaagatttcacattctc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22395695 |
atttcctctttgtggaatggttgaaatgctccaccatttctcttcacttctacgacatttgttttcctaggtacatcctgaacaaacatttcacattctc |
22395596 |
T |
|
| Q |
116 |
ttaatttcttttcaattatgaaacaaacaaaaagttctaaagaaacaattccattcaatgtatcaagcagacaataggcttgatgaattgagtgacgcgg |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22395595 |
ttaatttcttttcaattatgaaacagacaaaaagttctaaaggaacaattccattcaatgtatcaagcagacaataggcttgatgaattgagtgacgcgg |
22395496 |
T |
|
| Q |
216 |
aagaagtcctgatcaaaagtttcacagttcaaaatcgctaatttactaacgtttgcttataaaataaaaattcatttattaaaatcaacttcggttttgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22395495 |
aagaagtcctgatcaaaagtttcacagttcaaaatcgctaatttaccaacgtttgcttataaaataaaaattcatttattaaaatcaacttcggttttgc |
22395396 |
T |
|
| Q |
316 |
catccagaaacagttagtggtacaacttgttgtccgtttgcctttcagtccagtgtaattttccatgattaaatagtacnnnnnnnnttcgactttggtt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
22395395 |
catccagaaacagttagtggtacaacttgttgtctgtttgcctttcagtccagtgtaattttccatgattaaatcctacaaaaaaaattcgactttggtt |
22395296 |
T |
|
| Q |
416 |
ttgcaattttatacctctttagcagatgaagggttgggattccacaactgaacagatcttagccaatcagatttcatcttatgtgatgaatgttgctcct |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22395295 |
ttgcaattttatacctctttagcagatgaagggttgggattccacaactgaacagatcttagccaatcagatttcatcttatgtgatgaatgttgctcct |
22395196 |
T |
|
| Q |
516 |
catcgtcgtcatcttcctcatcattttcatcgcaatcgggggacaatgcccttttcttgataggaataaactcctcaaaaacaagaccttcatc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22395195 |
catcgtcgtcatcttcctcatcattttcatcgcaatcgggggacaatgcccttttcttgataggaataaactcctcaaaaacaagaccttcatc |
22395102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University