View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_high_43 (Length: 268)
Name: NF20985_high_43
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 15441433 - 15441692
Alignment:
| Q |
1 |
tgtgccacttgtccactttagcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttcatgcagacatgattcaaagagaagctgtgtg |
100 |
Q |
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| T |
15441433 |
tgtgccacttgtccactttagcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttgatgcagacatgattcaaagagaagctgtgtg |
15441532 |
T |
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| Q |
101 |
gccagagcgtttctggaaatttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacat |
200 |
Q |
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| T |
15441533 |
gccaaagagtttctggaaatttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacgttttgcacaaacttaacaacat |
15441632 |
T |
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| Q |
201 |
gcatgattcgataaacatttctgttttatatcatttcttgtttacgctacccagaattat |
260 |
Q |
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| T |
15441633 |
gcatgattcgataaacatttctgttttatattatttcttgtttacgcaacccagaattat |
15441692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 11788436 - 11788244
Alignment:
| Q |
9 |
ttgtccactttagcatgtcctaaagttctcgaggaaacaaaacatctacctaatgtgcttcatgcagacatgattcaaagagaagctgtgtggccagagc |
108 |
Q |
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| T |
11788436 |
ttgtccacattagcatgccctaaagtacttgaagaggcaagacatatccctgatgtgctatatggtgaattgcttcaaagatcagctgtgtggccagaga |
11788337 |
T |
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| Q |
109 |
gtttctggaaatttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacatg |
201 |
Q |
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| T |
11788336 |
gtttcaagaaatttggaacaaataatatgagcatcggcctttatttctttcctcagaatgaaaggtgacattttacgcaaacttgagaacatg |
11788244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 15281262 - 15281143
Alignment:
| Q |
101 |
gccagagcgtttctggaaatttggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacat |
200 |
Q |
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| T |
15281262 |
gccagagagtttcaggagatgtggaacaagtaatcacagcattgacctctatttctttcctcaagatgaaaggtgatattttgcacaaacttaagaactt |
15281163 |
T |
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| Q |
201 |
gcatgattcgataaacattt |
220 |
Q |
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| T |
15281162 |
gcttgatttgataaatattt |
15281143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 11779178 - 11779136
Alignment:
| Q |
132 |
aatctaagcattggcctttatttcttccctcagaatgaaaggt |
174 |
Q |
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| T |
11779178 |
aatctcagcattggcctttatttctttcctcggaatgaaaggt |
11779136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 501370 - 501307
Alignment:
| Q |
138 |
agcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaacatg |
201 |
Q |
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| T |
501370 |
agcattggcctttatttctttcctcacaatgaaaggtgacattttgcacaaacttgagaacatg |
501307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 43721309 - 43721384
Alignment:
| Q |
122 |
tggaacgaataatctaagcattggcctttatttcttccctcagaatgaaaggtgacattttgcacaaacttaagaa |
197 |
Q |
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| T |
43721309 |
tggaacaaataatcacaacattggcctctatttcattcctcaagatgaaaggtgatattttgcacaaacttgagaa |
43721384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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