View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_low_10 (Length: 540)
Name: NF20985_low_10
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 14 - 527
Target Start/End: Complemental strand, 37941650 - 37941137
Alignment:
| Q |
14 |
caacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagccactgcaaaagtaccctcttggttattcttctgct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37941650 |
caacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagccactgcaaaagtaccctcttggttattcttcagct |
37941551 |
T |
|
| Q |
114 |
cttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatgggtaatgtcttggaggaattaggaatattgaggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941550 |
cttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatgggtaatgtcttggaggaattaggaatattgaggc |
37941451 |
T |
|
| Q |
214 |
atgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaagaactcatcatgacaccattaacaacaatgattcatgtgatca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941450 |
atgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaagaactcatcatgacaccattaacaacaatgattcatgtgatca |
37941351 |
T |
|
| Q |
314 |
tatggattaattaattgtttaatttcataagtgtattttgtaaagcaactgatgctagtataattaagttcactcattatgtttttgttcatgaaaaatg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941350 |
tatggattaattaattgtttaatttcataagtgtaatttgtaaagcaactgatgctagtataattaagttcactcattatgtttttgttcatgaaaaatg |
37941251 |
T |
|
| Q |
414 |
gtattggtagtataattctaatgtatgaaagagtgaattttggtatttcctcaacttaactatatgaccatcaaatcaattaaacatttcttctttgcct |
513 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941250 |
gtactggtagtataattctaatgtatgaaagagtgaattttggtatttcctcaacttaactatatgaccatcaaatcaattaaacatttcttctttgcct |
37941151 |
T |
|
| Q |
514 |
tgtacttttggtct |
527 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37941150 |
tgtacttttggtct |
37941137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University