View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20985_low_11 (Length: 527)

Name: NF20985_low_11
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20985_low_11
NF20985_low_11
[»] chr3 (29 HSPs)
chr3 (17-517)||(22358528-22359028)
chr3 (17-517)||(22636029-22636529)
chr3 (30-517)||(22632391-22632875)
chr3 (42-479)||(22631033-22631467)
chr3 (17-517)||(22368438-22368932)
chr3 (47-517)||(22468474-22468941)
chr3 (62-517)||(22437160-22437624)
chr3 (210-507)||(22431687-22431978)
chr3 (22-517)||(22443265-22443769)
chr3 (22-152)||(22354262-22354392)
chr3 (57-161)||(22638017-22638121)
chr3 (453-517)||(22630965-22631029)
chr3 (356-420)||(22459100-22459164)
chr3 (356-420)||(22482081-22482145)
chr3 (230-318)||(22207667-22207755)
chr3 (22-58)||(22437604-22437640)
chr3 (101-279)||(22459220-22459407)
chr3 (101-279)||(22482201-22482388)
chr3 (227-271)||(3221871-3221915)
chr3 (231-282)||(22370908-22370959)
chr3 (227-273)||(2748680-2748726)
chr3 (227-273)||(2768751-2768797)
chr3 (227-273)||(2839010-2839056)
chr3 (227-273)||(2856220-2856266)
chr3 (227-273)||(3200635-3200681)
chr3 (227-273)||(3357767-3357813)
chr3 (239-277)||(22010502-22010540)
chr3 (239-277)||(22186668-22186706)
chr3 (246-279)||(22657830-22657863)
[»] chr4 (1 HSPs)
chr4 (98-128)||(29611145-29611175)
[»] chr1 (2 HSPs)
chr1 (246-279)||(34975186-34975219)
chr1 (244-272)||(4255365-4255393)


Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Complemental strand, 22359028 - 22358528
Alignment:
Q  17 aaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22359028 aaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcc 22358929  T
Q  117 caaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaa 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358928 caaaagaaattgaagaattgcaagaggaactagaaagaatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaa 22358829  T
Q  217 agacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358828 agacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgt 22358729  T
Q  317 gctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358728 gctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgata 22358629  T
Q  417 caagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacct 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358628 caagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacct 22358529  T
Q  517 t 517  Q
    |    
T  22358528 t 22358528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Complemental strand, 22636529 - 22636029
Alignment:
Q  17 aaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636529 aaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcc 22636430  T
Q  117 caaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaa 216  Q
    |||||||||||| ||||||| |||| ||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22636429 caaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaa 22636330  T
Q  217 agacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22636329 agacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggttgt 22636230  T
Q  317 gctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgata 416  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636229 gctgctgttgctacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgata 22636130  T
Q  417 caagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacct 516  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  22636129 caagaactgaaaaagatcatggcttctatatccaatcttcatcggataaagcatcaactagttctgcaacaaacagaaacgcctcactatttcagaacct 22636030  T
Q  517 t 517  Q
    |    
T  22636029 t 22636029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 517
Target Start/End: Complemental strand, 22632875 - 22632391
Alignment:
Q  30 cctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattga 129  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22632875 cctgcgcttgtgatcatttgcttccactagcccgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattga 22632776  T
Q  130 agaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaag 229  Q
    ||||||| |||| ||||| |||| ||| ||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||    
T  22632775 agaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatgtggatagaacagctgatgatgtagaagacaagaaaatcaaagacatgatcaag 22632676  T
Q  230 cagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgtta 329  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |||| | ||    
T  22632675 cagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctactggagcta 22632576  T
Q  330 caaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaa 429  Q
       |||  || ||||||| |  | | ||||||||||| ||| ||||||||||||||||||||||| |||| || |||||||| || |||||   ||||||    
T  22632575 ttgacttggtgaaaactaagattcttcgtctccaaattgctgacaagattcagaacatcaaatccagaattagagaaataaaagaaacaag---tgaaaa 22632479  T
Q  430 agatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacctt 517  Q
    ||||||||||||| | ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||| |||||||||    
T  22632478 agatcatggcttccacatccaatcttcttcggataaaccatcaagtagttctgcaacaaacagaaatgcctcattattgcagaacctt 22632391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 42 - 479
Target Start/End: Complemental strand, 22631467 - 22631033
Alignment:
Q  42 atcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaaga 141  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22631467 atcatttgcttccactagcccgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaaga 22631368  T
Q  142 ggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaa 241  Q
     ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22631367 tgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaa 22631268  T
Q  242 gcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtca 341  Q
    |||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |      |||  || |    
T  22631267 gcatctttccacatggaagatgtcattgatgattatatcttccatgaggaacaacatgctcctgatcctggatgtgctgctggagccgttgacttggtga 22631168  T
Q  342 aaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggctt 441  Q
    |||||| |  | | ||||||||||| |||||||||||||||||||||||||||| ||| || |||||||| || |||||   ||||||||||||||||||    
T  22631167 aaactaagattcttcgtctccaaattgcttacaagattcagaacatcaaatcccaaattagagaaataaaagaaacaag---tgaaaaagatcatggctt 22631071  T
Q  442 ctatatccaatcttcttcggataaagcatcaactagtt 479  Q
    | | ||||||||||||||||||||| |||||| |||||    
T  22631070 ccacatccaatcttcttcggataaaccatcaagtagtt 22631033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 17 - 517
Target Start/End: Complemental strand, 22368932 - 22368438
Alignment:
Q  17 aaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcc 116  Q
    |||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22368932 aaagctgcacttgcctgcgctcgtgataacttgcttccactagcccgtgatcatttgcttccactcttgaaggaagcattcaacatgattaggggtgtcc 22368833  T
Q  117 caaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaa 216  Q
    |||||||||||| ||||||| |||| ||||| ||||  || |||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  22368832 caaaagaaattgcagaattgaaagatgaacttgaaagcattgaagacttcatcaacgatgcggatagaagatctgatgatgtagaagacaagaaaatcaa 22368733  T
Q  217 agacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgt 316  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  || |||| |||||||||    
T  22368732 agacatgacgaagcagctgatagaaacatcttttcacatagaagatgtcattgatgattatatcttccttgaggaacatcaatcttctgaacctggatgt 22368633  T
Q  317 gctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgata 416  Q
    ||||||| ||||    |||   |||||||||      | ||||||||||| ||||| ||||||||||||||||| |||| ||| || |||||||| || |    
T  22368632 gctgctgctgtt---gacttgctcaaaactacaaaactacgtctccaaattgcttataagattcagaacatcaattcccaaattagggaaataaaagaaa 22368536  T
Q  417 caagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacct 516  Q
    ||||   |||||| ||||||| |||| | ||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  22368535 caag---tgaaaaggatcatgacttcgacatccaatcttctttggataaagcatcaagtagttctgcaacaaacagaaatgcctcattatttcagaacct 22368439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 47 - 517
Target Start/End: Complemental strand, 22468941 - 22468474
Alignment:
Q  47 ttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaac 146  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||  ||| |||||||||| ||||||| |||| ||||    
T  22468941 ttgcttccactagcccgtgatcatttgcttccgctcttcaaggaagcattcaacatgattaggggtaacccgaaagaaattgtagaattgaaagatgaac 22468842  T
Q  147 tagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatc 246  Q
    ||||||  || |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22468841 tagaaagcattgaagacttcatcaacgatgcggatagaagagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatc 22468742  T
Q  247 ttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaact 346  Q
    || |||||||||||||||  |||||||||||||||| ||||||||||||||  || |||||||||||||||||||||||| |    |||  || ||||||    
T  22468741 ttatcacatagaagatgtggttgatgattatatcttacttgaggaacaacaatcttctgatcctggatgtgctgctggtgctgttgacttggtgaaaact 22468642  T
Q  347 atggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttctata 446  Q
    | |    | |||||||||||| |||||||||||||||||||||| |||||||| || |||||||| || |||||   || |||||||||||||||| | |    
T  22468641 aagatccttcgtctccaaataacttacaagattcagaacatcaagtcccgaatcagagaaataaaagaaacaag---tgcaaaagatcatggcttcaaca 22468545  T
Q  447 tccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacctt 517  Q
    ||||||||||||| |||||| ||||||  |||| |||||||||||||||||||||||| || |||||||||    
T  22468544 tccaatcttcttcagataaaccatcaagcagttctgcaacaaacagaaacgcctcatttttgcagaacctt 22468474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 62 - 517
Target Start/End: Complemental strand, 22437624 - 22437160
Alignment:
Q  62 cgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaag 161  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||| |  || ||||    
T  22437624 cgtgatcatttgcttccactattaaaggtagcattcaacatgattaggggtgtcccaaaagaaattgcagatttgaaagatgaactagagagcatggaag 22437525  T
Q  162 tcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaa------------tcaaagacatgatcaagcagctgatagaagcatcttt 249  Q
     |||||||| | |||  |||| |   |||||||| | ||||||||| ||||            ||||||  | ||| ||| |||| ||||||||||||||    
T  22437524 acttcatcagcaatgaagatagattcgctgatgaagaagaagacaaaaaaagaagtgatgcaatcaaagcaaggatgaagaagctaatagaagcatcttt 22437425  T
Q  250 tcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatg 349  Q
    | ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  22437424 tgacatagaagatgtcattgatgattatatcttccatgaggaacaacaagctcctgatcctggatgtgccgctggtgccacaaactgtgtcaaaactatg 22437325  T
Q  350 gctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttctatatcc 449  Q
    |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||| | ||||  | |||    
T  22437324 gctcaccgtctccaaatagcctacacgattcagaacatcaaatcccgaatgagtgaaataaaagatacaag---tgaaaaagatcaagccttccgtctcc 22437228  T
Q  450 aatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacctt 517  Q
    |||||||||||||||||||||||| ||||| |||| |||||| ||||   ||||||||||||||||||    
T  22437227 aatcttcttcggataaagcatcaagtagttctgcaccaaacataaacaattcattatttcagaacctt 22437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 210 - 507
Target Start/End: Complemental strand, 22431978 - 22431687
Alignment:
Q  210 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcc 309  Q
    |||||||||  | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  || |||||||    
T  22431978 aaatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcc 22431879  T
Q  310 tggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaata 409  Q
    |||||| ||||||||| ||    |||   ||||||||| |  | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22431878 tggatgcgctgctggtcttg---acttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaata 22431782  T
Q  410 aatgatacaagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatt 507  Q
    || ||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22431781 aaagatacaag---tgaaaaagatcatggcttccatatccaatcttcttcggataaagcatcaactagttctgcaacaaacagaaacgcctcattatt 22431687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 22 - 517
Target Start/End: Complemental strand, 22443769 - 22443265
Alignment:
Q  22 tgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaa 121  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22443769 tgcactttcctgcgctcgtgataacttgcttccactagcccgtgatcatttgcttccaatcttgaaggaagcattcaacatgattaagggtgtcccaaaa 22443670  T
Q  122 gaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagac------------aaga 209  Q
    ||||||| ||||||| |||| |||||||||| ||| |||   ||||||||| |||| |||| || |||||||| || |||||||             |||    
T  22443669 gaaattgcagaattgaaagatgaactagaaagaattgaaaaattcatcaacaatgcagatagaatggctgatgctgaagaagacgtggaaacaagtcaga 22443570  T
Q  210 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcc 309  Q
    |||||||||  |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||  || ||||||     
T  22443569 aaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatatcttccttgaagaacatcaatcttctgatct 22443470  T
Q  310 tggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaata 409  Q
    |||||||||||||||| ||    |||   ||||||||| |  | | ||||||||||||||    ||||||||||||||||| || ||||| || ||||||    
T  22443469 tggatgtgctgctggtctt---gacttgatcaaaactaagattcttcgtctccaaatagcagttaagattcagaacatcaattctcgaattagagaaata 22443373  T
Q  410 a---atgatacaagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattat 506  Q
    |   | ||| ||||   ||||||||||||||||||| | |||| ||||||||| |||||  |||||| ||||| | ||||||    ||||||||||||||    
T  22443372 aaacaagattcaag---tgaaaaagatcatggcttccaaatccgatcttcttccgataagccatcaagtagttctccaacaagtgaaaacgcctcattat 22443276  T
Q  507 ttcagaacctt 517  Q
    | || ||||||    
T  22443275 tgcacaacctt 22443265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 22354392 - 22354262
Alignment:
Q  22 tgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaa 121  Q
    ||||||| ||||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  22354392 tgcactttcctgcgcccgtgatcacttgcttccgctagcccatgatcatttgcttccactcttgaaggaagcattcaatatgattagggttgtcccaaaa 22354293  T
Q  122 gaaattgaagaattgcaagaggaactagaaa 152  Q
    ||||||| ||||||| |||||||||| ||||    
T  22354292 gaaattgcagaattgaaagaggaacttgaaa 22354262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 22638121 - 22638017
Alignment:
Q  57 tagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataat 156  Q
    |||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||    
T  22638121 tagctcgtgataaattgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaat 22638022  T
Q  157 agaag 161  Q
     ||||    
T  22638021 tgaag 22638017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 22631029 - 22630965
Alignment:
Q  453 cttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcattatttcagaacctt 517  Q
    |||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| |||||||||    
T  22631029 cttcttcggataaaccatcaagtagttctgcaacaaacagaaacacctcattattccagaacctt 22630965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 22459164 - 22459100
Alignment:
Q  356 cgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaag 420  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||| |||||||| |||||||||||    
T  22459164 cgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaag 22459100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 22482145 - 22482081
Alignment:
Q  356 cgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaag 420  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||| |||||||| |||||||||||    
T  22482145 cgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaag 22482081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 22207667 - 22207755
Alignment:
Q  230 cagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgc 318  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| |||||  |   ||||| ||||||  ||| |||||||||||||||    
T  22207667 cagctgagagaagcatcttttcagatacaagatgtcattgatgaatatatgatatgtgagggacaacagcctcatgatcctggatgtgc 22207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 22437640 - 22437604
Alignment:
Q  22 tgcacttgcctgcgctcgtgatcatttgcttccacta 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  22437640 tgcacttgcctgcgctcgtgatcatttgcttccacta 22437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 22459407 - 22459220
Alignment:
Q  101 atgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtag 200  Q
    |||||||||||||||||||||||||||  |||  || |||| ||||| ||||  || |||  |||||||||| |||| |||| ||  ||||||| || ||    
T  22459407 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22459308  T
Q  201 aagacaa-------gaa--aatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatat 279  Q
    | |||||       |||  ||||||||  | |||||||||||| |||||||||||||||  |||  |||||||||||||||| |||||    
T  22459307 atgacaatgcaagtgaaggaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22459220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 22482388 - 22482201
Alignment:
Q  101 atgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtag 200  Q
    |||||||||||||||||||||||||||  |||  || |||| ||||| ||||  || |||  |||||||||| |||| |||| ||  ||||||| || ||    
T  22482388 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22482289  T
Q  201 aagacaa-------gaa--aatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatat 279  Q
    | |||||       |||  ||||||||  | |||||||||||| |||||||||||||||  |||  |||||||||||||||| |||||    
T  22482288 atgacaatgcaagtgaaggaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22482201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 3221915 - 3221871
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgat 271  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||    
T  3221915 aagcagctaagagaagcatcttttcacatagaagatgtgattgat 3221871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 22370959 - 22370908
Alignment:
Q  231 agctgatagaagcatcttttcacatagaagatgtcattgatgattatatctt 282  Q
    |||||| ||||  ||||||| |||||||||||||||||||||| ||||||||    
T  22370959 agctgaaagaaatatctttttacatagaagatgtcattgatgaatatatctt 22370908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 2748680 - 2748726
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 273  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2748680 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2748726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 2768751 - 2768797
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 273  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2768751 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2768797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 2839056 - 2839010
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 273  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2839056 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2839010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 2856266 - 2856220
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 273  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2856266 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2856220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 3200635 - 3200681
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 273  Q
    |||||||| | |||||||||||||| |||||||||||| ||||||||    
T  3200635 aagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3200681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 3357813 - 3357767
Alignment:
Q  227 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 273  Q
    |||||||| | |||||||||||||| |||||||||||| ||||||||    
T  3357813 aagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3357767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 22010502 - 22010540
Alignment:
Q  239 gaagcatcttttcacatagaagatgtcattgatgattat 277  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22010502 gaagcagcttttcacatagaagatatcattgatgattat 22010540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 22186668 - 22186706
Alignment:
Q  239 gaagcatcttttcacatagaagatgtcattgatgattat 277  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22186668 gaagcagcttttcacatagaagatatcattgatgattat 22186706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 22657863 - 22657830
Alignment:
Q  246 cttttcacatagaagatgtcattgatgattatat 279  Q
    |||||| |||||||||||||||||||||||||||    
T  22657863 cttttcgcatagaagatgtcattgatgattatat 22657830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 128
Target Start/End: Complemental strand, 29611175 - 29611145
Alignment:
Q  98 aacatgattaggggtgtcccaaaagaaattg 128  Q
    |||||||||||||||||||||||||||||||    
T  29611175 aacatgattaggggtgtcccaaaagaaattg 29611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 34975186 - 34975219
Alignment:
Q  246 cttttcacatagaagatgtcattgatgattatat 279  Q
    |||||| |||||||||||||||||||||||||||    
T  34975186 cttttctcatagaagatgtcattgatgattatat 34975219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 4255365 - 4255393
Alignment:
Q  244 atcttttcacatagaagatgtcattgatg 272  Q
    |||||||||||||||||||||||||||||    
T  4255365 atcttttcacatagaagatgtcattgatg 4255393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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