View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_12 (Length: 498)
Name: NF20985_low_12
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 12502386 - 12502865
Alignment:
| Q |
8 |
aagcataggaacaaggtcagttctgtaggcgagcacagtcataatactttcaagtggcaatgtgttcaagataacatataacaacccacaaactgcacca |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12502386 |
aagcataggaacaaggtcagttctgtaggcaagcacagtcataatactttcaagtggcaatgtgttcaagataacatataacaacccacaaactgcacca |
12502485 |
T |
|
| Q |
108 |
acggctgcaacctccatatcatctggcccattggcagctgaaatatctctgaataatatatttgtctgcacatgtcnnnnnnntgacatttcaccatcaa |
207 |
Q |
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| T |
12502486 |
acggctgcaacctccatatcatctggcccattggcagctgaaatatctctgaataatatatttgtctgcacatgtcaaaaaaatgacatttcaccatcaa |
12502585 |
T |
|
| Q |
208 |
taatatatannnnnnnnnnaaatacaacaacaaccaagccttttcccact----gaggtcaccaatttttcnnnnnnnntggtaaagaaannnnnnngat |
303 |
Q |
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| T |
12502586 |
cttt-tatttttattttttaaatacaacaacaaccaagccttttcccactaagtgaggtcaccaatttttcaaaaaaaatggtaaagaaatttttttgat |
12502684 |
T |
|
| Q |
304 |
ggcacttaagatacaaaagtcatttgcatgatggtataccagttgcagaaggaagcgagtatcaatagaattacaaatttgttgatccaatttcctatcc |
403 |
Q |
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| T |
12502685 |
ggcacttaagatacaaaagtcatttgcatgatggtataccagttgcagaaggaagcgagtatcaatagaattacaaatttgttgatccaatttcctatcc |
12502784 |
T |
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| Q |
404 |
agagctacttccatgacttcatcgtcgccagtcatatcatcctcagcaatcatagaatctgaaattaacaatgaccagctt |
484 |
Q |
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| T |
12502785 |
agagctacttccatgacttcatcgtcgccagtcatatcatcctcagcaatcatagaatctgaaattaacaatgaccagctt |
12502865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 12479352 - 12479527
Alignment:
| Q |
8 |
aagcataggaacaaggtcagttctgtaggcgagcacagtcataatactttcaagtggcaatgtgttcaagataacatataacaacccacaaactgcacca |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
12479352 |
aagcataggaacaaggtcagttctgtaggcgagcacagtcataatcctttcaattggcaatgtgttcaagacaacatataaaaacccgcaaactgcacca |
12479451 |
T |
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| Q |
108 |
acggctgcaacctccatatcatctggcccattggcagctgaaatatctctgaataatatatttgtctgcacatgtc |
183 |
Q |
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| T |
12479452 |
acggctgcaacctccatatcatctggcccattggcagatgaaatatctctaaataatatatttgtctgcaaatgtc |
12479527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 301 - 484
Target Start/End: Original strand, 12479585 - 12479768
Alignment:
| Q |
301 |
gatggcacttaagatacaaaagtcatttgcatgatggtataccagttgcagaaggaagcgagtatcaatagaattacaaatttgttgatccaatttccta |
400 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
12479585 |
gatggcactcaagatacaaaagtcatttgcatgatgatataccagttgcagaaggaagcgagtatctatggaattataaatttgttgatccaatttccta |
12479684 |
T |
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| Q |
401 |
tccagagctacttccatgacttcatcgtcgccagtcatatcatcctcagcaatcatagaatctgaaattaacaatgaccagctt |
484 |
Q |
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|||| ||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12479685 |
tccaaagccacttccatgacttcatcattgccagtaatatcatcctcagcaatcatagaatctgaaattaacactgaccagctt |
12479768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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