View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_13 (Length: 494)
Name: NF20985_low_13
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 487
Target Start/End: Complemental strand, 27168644 - 27168170
Alignment:
| Q |
15 |
ttaacaccaggaatcatatctagaacatgatcaagagtcgaaaaatcacaattcgcctcaacattttcagagaatttcttaaaccaaacaaccgcattac |
114 |
Q |
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| T |
27168644 |
ttaacaccaggaatcatatctagaacatgatcaagaatcgaaaaatcacaattcgcctcaacattttctgagaatttcttaaaccaaacaaccgcattac |
27168545 |
T |
|
| Q |
115 |
tcccacggcaacaaggcggtggaaaccgacacacggtggaacccttaacccaatcactaacctcagcgttaatcttttccaacccataagtaacgtgttc |
214 |
Q |
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| T |
27168544 |
tcccacggcaacaaggcggtggaaaccgacacacggtggaacccttaacccaatcactaacttcagcgttaatcttttccaacccataagtaacgtgttc |
27168445 |
T |
|
| Q |
215 |
tggaagcaaaccaccgtggacgaaaatcgagtcaccaactaccaacacagtagcattgtgggacaagaaccttccagaaatcgggccattgggtctca-- |
312 |
Q |
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| T |
27168444 |
tggaagcaaaccaccgtggacgaaaatcgagtcaccaactaccaacacagtagcattgtgggacaagaaccttccagaaatcgggccattgggtctcaac |
27168345 |
T |
|
| Q |
313 |
gctgcaaccctagcactaaggccatcatgaaatttcttccttaagccgctaaattccacgtgaataccttctaagggatctttcggcggtttcaaaccgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27168344 |
gctgcaaccctagcactaaggccatcatgaaatttcttccttacgccgctaaattccacgtgaataccttctaagggatctttcggcggtttcaaaccgt |
27168245 |
T |
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| Q |
413 |
ggcaaagactcttcatcatgttaccttggcggaaccattctaaccaaaccctaaattccttaacaccagcctttg |
487 |
Q |
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| T |
27168244 |
ggcaaagactcttcatcatgttaccttggcggaaccattctaaccaaaccctaaattccttaacaccagcttttg |
27168170 |
T |
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Back To:
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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 344
Target Start/End: Complemental strand, 484810 - 484618
Alignment:
| Q |
154 |
aacccttaacccaatcactaacctcagcgttaatcttttccaacccataagtaacgtgttctggaagcaaaccaccgtggacgaaaatcgagtcaccaac |
253 |
Q |
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|||||||| |||||||||||||||| | |||||||| |||||||||||| ||| |||||| | ||||||||| || || |||||||| |||||||| |
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| T |
484810 |
aacccttataccaatcactaacctcaccattaatcttctccaacccataatcaacatgttctttcaacaaaccaccatgaacaaaaatcgaatcaccaac |
484711 |
T |
|
| Q |
254 |
taccaacacagtagcattgtgggacaagaaccttccagaaatcgggccattgggtct--cagctgcaaccctagcactaaggccatcatgaaa |
344 |
Q |
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| T |
484710 |
taccaaaacagtaacattttgtgtaaagaacctttttgaaatcggcccattcggccttaaagccgcaaccctagccctaaacccatcatgaaa |
484618 |
T |
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