View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_14 (Length: 490)
Name: NF20985_low_14
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 3701998 - 3701524
Alignment:
| Q |
1 |
tgaaacaatgctaagaggatcacctgttgctagtctccatagacaaacagctactctttgtctcactggaattgcagttctcaaagttgtatcttctttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701998 |
tgaaacaatgctaagaggatcacctgttgctaatctccatagacaaacagctactctttgtctcactggaattgcagttctcaaagttgtatcttctttc |
3701899 |
T |
|
| Q |
101 |
acaattgctgaattcagttcttcacaaatcaaatcaaaagttgattttcccattctaaaagctttcttaaactcatcttcaggaaaatcttctttattac |
200 |
Q |
| |
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|||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701898 |
acaattgctgaattcaatttttcacaaataaaatcaaaagttgattttcccattctaaaagctttcttaaactcatcttcaggaaaatcttctttattac |
3701799 |
T |
|
| Q |
201 |
attcatcccaccatgctcctgaacgatccttcacccatagccttctctgtgaaccaccaccattagatataccactgttaacatcattttttctacgtct |
300 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3701798 |
attcatcccaccatgccccggaacgatccttcacccatagccttctctgtgaaccaccaccattagatataccactgttaacatcattttttctatgtct |
3701699 |
T |
|
| Q |
301 |
ttttctgttatttgttgaagtagcagtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701698 |
ttttctgttatttgttgaagtagcagtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtct |
3701599 |
T |
|
| Q |
401 |
gcaaaagtcccaagtttcataaatattagaaaattcgattttaaactcatgcccaaatgtcaagtatttatagtg |
475 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3701598 |
gcaaaagtcccaagtttcataaatactagaaaattcgattttaaactcaggcccaaatgtcaagtatttatagtg |
3701524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 3698310 - 3698023
Alignment:
| Q |
1 |
tgaaacaatgctaagaggatcacctgttgctagtctccatagacaaacagctactctttgtctcactggaattgcagttctcaaagttgtatcttctttc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698310 |
tgaaacaattctaagaggatcacctgttgctaatctccatagacaaacagctactctttgtctcactggaattgcagttctcaaagttgtatcttctttc |
3698211 |
T |
|
| Q |
101 |
acaattgctgaattcagttcttcacaaatcaaatcaaaagttgattttcccattctaaaagctttcttaaactcatcttcaggaaaatcttctttattac |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
3698210 |
acaattgctgaattcaattcttcacaaatcaaatcaaaagttgattttcccattctaaatgctttcttaaactcatcttcaggaaaatcttctttgttac |
3698111 |
T |
|
| Q |
201 |
attcatcccaccatgctcctgaacgatccttcacccatagccttctctgtgaaccaccaccattagatataccactgttaacatcatt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3698110 |
attcatcccaccatgctcctgaacgatccttcacccaaagccttctctgtgaaccaccaccattagatttaccactgttaacatcatt |
3698023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 284 - 434
Target Start/End: Complemental strand, 3697655 - 3697505
Alignment:
| Q |
284 |
tcattttttctacgtctttttctgttatttgttgaagtagcagtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatg |
383 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3697655 |
tcattttttctacgtctttttctgatatttgttgaagtagcagtgttgtttggatcgttcatctggtcaaatgaattttgaagtaaggtataaacgtatg |
3697556 |
T |
|
| Q |
384 |
aaagtgattctgggtctgcaaaagtcccaagtttcataaatattagaaaat |
434 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
3697555 |
aaagtgattctgggtctgcaaaagttgggagtttcataaatactaaaaaat |
3697505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 475
Target Start/End: Complemental strand, 20892407 - 20892375
Alignment:
| Q |
443 |
aaactcatgcccaaatgtcaagtatttatagtg |
475 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
20892407 |
aaactaatgcccaaatgtcaagtatttatagtg |
20892375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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