View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_low_18 (Length: 444)
Name: NF20985_low_18
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 53660557 - 53660244
Alignment:
| Q |
19 |
gtataatgactgcagagaccggaacatatcggtggatggctccagaggtctgtgtatatatataagcattgccatagggttggttacttctaaattttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53660557 |
gtataatgactgcagagaccggaacatatcggtggatggctccagaggtctgtgtatatatataagcattgccatagggttggttacttctaaattttaa |
53660458 |
T |
|
| Q |
119 |
aatgtataacctacaggtttggatgaggaagtttaagacgaacctagacaagttggaatgagaatgacggcttttatgctgaaaattgaataattggaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53660457 |
aatgtataacctacaggtttggatgaggaagtttaagacgaacctagactagttggaatgagaatgacggcttttatgctgaaaattgaataattggaac |
53660358 |
T |
|
| Q |
219 |
tgaatatctattaaagctaacatgaattttagnnnnnnncgttgcttatacgctttgcaaatagataataacaattttgttccctattttataaacctca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53660357 |
tgaatatctattaaagctaacatgaattttagtttttttcgttgcttatacgctttgcaaatagataataacaattttgttccctattttataaacctca |
53660258 |
T |
|
| Q |
319 |
ccatctctcttgtt |
332 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
53660257 |
ccctctctcttgtt |
53660244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 53660208 - 53660103
Alignment:
| Q |
329 |
tgttcgtcctaacgaaataagtatctcactgannnnnnngtgacataggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53660208 |
tgttcgtcctaacgaaataagtatctcactgatttctttgtgacgtaggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
53660109 |
T |
|
| Q |
429 |
cctttg |
434 |
Q |
| |
|
|||||| |
|
|
| T |
53660108 |
cctttg |
53660103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 8449682 - 8449624
Alignment:
| Q |
19 |
gtataatgactgcagagaccggaacatatcggtggatggctccagaggtctgtgtatat |
77 |
Q |
| |
|
|||| |||||||| || || ||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
8449682 |
gtatcatgactgcggaaactggaacgtaccggtggatggctccagaggtatgtgtatat |
8449624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University