View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_low_2 (Length: 756)
Name: NF20985_low_2
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 254 - 596
Target Start/End: Original strand, 47751345 - 47751705
Alignment:
| Q |
254 |
gtggtctttttctcataacacagatccctatggaatgaagtgggtgctccccacccagcatttgc----------tttgctctcacatactaatatttta |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47751345 |
gtggtctttttctcataacacagatccctatggaatgaagtgggtgctccccacccagcatttgcattgctttgctttgctctcacatactaatatttta |
47751444 |
T |
|
| Q |
344 |
ttcattccttttgtttagtttaaagagaccacttttgttgtgtttcggactgagacatacacacatgttttctttcttcagttcatcagtttatatatat |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47751445 |
ttcattccttttgtttagtttaaagagaccacttttgttgtgtttcggactgagacatacacacatgttttctttcttcagttcatcagtttatatatat |
47751544 |
T |
|
| Q |
444 |
gtt--------tgtttggtactagttacataaataaataaatttcacttgttcacatgcagaaacagaagacgaatagaggtagatttttcaacatgatt |
535 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47751545 |
gtttgtttgtttgtttggtactagttacataaataaataaatttcacttgttcacatgcagaagcagaagacgaatagaggtagatttttcaacatgatt |
47751644 |
T |
|
| Q |
536 |
agtttattttctgagcaatgattgagttgagttgagtatatataaaatcaaatcttgctgc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47751645 |
agtttattttctgagcaatgattgagttgagttgagtatatataaaatcaaatcttgctgc |
47751705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 47751106 - 47751312
Alignment:
| Q |
15 |
cacagacacagatgtatagccagctagccgcagtagtagctgaccaaaatagttaatcaaccatttacattctcatctttttctatatttacgcttttac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47751106 |
cacagacacagatgtatagccagctagccgcagtagtagctgaccaaaatagttaatcaaccatttacattctcatctttttctatatttacgcttttac |
47751205 |
T |
|
| Q |
115 |
acattcacattcttattatttctattttctgggtttaacaaaggtttaacacaaaagcctaacttaactggggtgtcttaaattaattaaacatagaaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47751206 |
acattcacattcttattatttctattttctgggtttaacaaaggtttaacacaaaagcctaacttaactggggtgtcttaaattaattaaacatagaaat |
47751305 |
T |
|
| Q |
215 |
ataaaac |
221 |
Q |
| |
|
||||||| |
|
|
| T |
47751306 |
ataaaac |
47751312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 624 - 738
Target Start/End: Original strand, 47751738 - 47751852
Alignment:
| Q |
624 |
atagattctgttaggtagtagcaaagttgaaacctttttcaagtaaataaagataataacaaaacaaaacaagatgaagtccatgaatgacagtagtaac |
723 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47751738 |
atagattctgttaggtagtagcaaagttgaaacctttttcaagtaaagaaagataataacaaaacaaaacaagatgaagtccatgaatgacagtagtaac |
47751837 |
T |
|
| Q |
724 |
tctgatgacagaaac |
738 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47751838 |
tctgatgacagaaac |
47751852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 477 - 562
Target Start/End: Complemental strand, 11750829 - 11750747
Alignment:
| Q |
477 |
tttcacttgttcacatgcagaaacagaagacgaatagaggtagatttttcaacatgattagtttattttctgagcaatgattgagt |
562 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11750829 |
tttcacttcttcacatgcagaagcagaaga---atagaggtagatttttcaacatgattagtttattttcggagcaatgattgagt |
11750747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 624 - 685
Target Start/End: Complemental strand, 11750720 - 11750659
Alignment:
| Q |
624 |
atagattctgttaggtagtagcaaagttgaaacctttttcaagtaaataaagataataacaa |
685 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
11750720 |
atagattatgtttggtaggagcaaagttgaaacctttttcaagtaaagaaagataaaaacaa |
11750659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 481
Target Start/End: Complemental strand, 11750948 - 11750852
Alignment:
| Q |
376 |
ttttgttgtgtttcggactgagacatacacacatgttttctttcttcagttcatcagtttatatatatgtttgtttggtactagttacataaataaataa |
475 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||| |||| || ||||||| ||||||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
11750948 |
ttttgttgtgtttcagagtgagaca----cacatgtttcctttgttgagttcatgagtttatatat--gtttggttggta---gttacataaataaataa |
11750858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 11750998 - 11750951
Alignment:
| Q |
253 |
cgtggtctttttctcataacacagatccctatggaatgaagtgggtgc |
300 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
11750998 |
cgtggtcattttctcataacacatatccttatggaatgaagtgggtgc |
11750951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University