View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_21 (Length: 407)
Name: NF20985_low_21
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 49085677 - 49086045
Alignment:
| Q |
18 |
tgtttcaagttaccttcattattgatttacagtctgacttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtgaaatcaaattgt |
117 |
Q |
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| T |
49085677 |
tgtttcaagttaccttcattattgatttacagtctgacttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtgaaatcaaattgt |
49085776 |
T |
|
| Q |
118 |
ttttaatagcatttttagtgctttctgtcggcttgtttgttaattatattgactcattgactgtctcctacaaatttaggattgtaattattatgtagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085777 |
ttttaatagcatttttagtgctttctgtcggcttgtttgttaattacattgactcattgactgtctcctacaaatttaggattgtaattattatgtagtg |
49085876 |
T |
|
| Q |
218 |
attgatttgaattttttattgtacctcg----tgtaaatcttacttgttagggctgtggtttaactagtatgcttatgtctaataacgatgaggccaaga |
313 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
49085877 |
attgatttgaattttttattgtacctcgtttatttaaatcttacttgttagggctgtggtttaactagcatgcttatgtctaataacgatgaagccaaga |
49085976 |
T |
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| Q |
314 |
tcctgcttttagctggaagaattgcatttgcaggaatgatttcgtccgttcttacattatttctgtgcc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085977 |
tcctgcttttagctggaagaattgcatttgcaggaatgatttcgtccgttcttacattatttctgtgcc |
49086045 |
T |
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