View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20985_low_22 (Length: 405)

Name: NF20985_low_22
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20985_low_22
NF20985_low_22
[»] chr3 (14 HSPs)
chr3 (1-376)||(2686014-2686392)
chr3 (1-286)||(2678182-2678476)
chr3 (276-376)||(2678043-2678141)
chr3 (20-90)||(3754593-3754663)
chr3 (25-91)||(4142121-4142187)
chr3 (18-86)||(1007452-1007520)
chr3 (18-86)||(1022480-1022548)
chr3 (243-289)||(989621-989667)
chr3 (1-83)||(803213-803295)
chr3 (20-85)||(4157937-4158002)
chr3 (124-163)||(4157859-4157898)
chr3 (1-50)||(1937008-1937057)
chr3 (25-83)||(2696727-2696785)
chr3 (131-163)||(4142049-4142081)
[»] chr5 (5 HSPs)
chr5 (22-91)||(11081808-11081877)
chr5 (1-90)||(23769634-23769723)
chr5 (1-90)||(23819482-23819571)
chr5 (20-86)||(23766854-23766920)
chr5 (20-86)||(23816702-23816768)
[»] chr4 (1 HSPs)
chr4 (20-83)||(20019767-20019830)
[»] chr2 (1 HSPs)
chr2 (243-289)||(36577622-36577668)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 2686392 - 2686014
Alignment:
Q  1 attgtttgtgcttgatctgtggtgatgatgtttgggttat---gaaggaatatggnnnnnnngagtcttggaataaattgttcactattccttatatgct 97  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  2686392 attgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattccttatatgct 2686293  T
Q  98 gtatcgtagtagatatagtatctacaccaaggtaatatatgtttttgaggatgatcaagtgctgctaaaagatttaagtgattcggcattgattctttac 197  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686292 gtatcgtggtagatatagtatctacaccaaggtaatatatgtttttgaggatgatcaagtgctgctaaaagatttaagtgattcggcattgattctttac 2686193  T
Q  198 aattccaaaaatggtactcataagtcttttaattttatagacattccagaagtctgcattgagagtttaatatggccttgttcttaatgttatgtcactt 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686192 aattccaaaaatggtactcataagtctattaattttatagacattccagaagtctgcattgagagtttaatatggccttgttcttaatgttatgtcactt 2686093  T
Q  298 gagcatgagattcaactgatacatctttcaggaaaaaactgatacacatatattagtttctgtttatgttatttattta 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686092 gagcatgagattcaactgatacatctttcaggaaaaaactgatacacatatattagtttctgtttatgttatttattta 2686014  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2678476 - 2678182
Alignment:
Q  1 attgtttgtgcttgatctgtggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactattccttatatgctgta 100  Q
    |||| ||||||||||  ||||||||||||||||||||||||||  |||||||       ||||| |||| |||||||||||||||||||||   ||   |    
T  2678476 attgcttgtgcttgacttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattccttacgagcgtga 2678377  T
Q  101 tcgtagtagatatagtatctacaccaaggtaatatatgtttttgaggatgatcaa---gtgctgctaaaagatttaagtgattcggca------ttgatt 191  Q
    || || |||||     || ||| ||||||||||||||||||||||||||||| ||   ||| || |  |   |||| ||| || || |      ||||||    
T  2678376 tcctaatagattctacatgtacgccaaggtaatatatgtttttgaggatgatgaagtggtgatgttgcacattttaggtgctttgggattgaatttgatt 2678277  T
Q  192 ctttacaattccaaaaatggtactcataagtcttttaattttatagacattccagaagtctgcattgagagtttaatatggccttgttcttaatg 286  Q
    || |||||||  ||||||||||||| |||||||   ||| ||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2678276 ctctacaattataaaaatggtactcttaagtctacaaatcttaaaaacaatccagaagtctgtattgagagtttaatatggccttgttcttaatg 2678182  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 2678141 - 2678043
Alignment:
Q  276 tgttcttaatgttatgtcacttgagcatgagattcaactgatacat-ctttcaggaaaaaactgatacacatatattagtttctgtttatgttatttatt 374  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||  ||||||||| || ||||||||||  | |||||||||||||||    
T  2678141 tgttcttaattttatgtcacttgagcgtgagattcaactgatacatcctttca-gattaaactgataaacttatattagtt--tttttatgttatttatt 2678045  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 3754593 - 3754663
Alignment:
Q  20 tggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactattcctt 90  Q
    ||||| |||||||||||||||||||||||||||       |||||||||| ||||||||| ||||||||||    
T  3754593 tggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattcctt 3754663  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 4142187 - 4142121
Alignment:
Q  25 atgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactattcctta 91  Q
    ||||||||||| ||||||||||||||||       |||||||||| |||||||||||||||||||||    
T  4142187 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 4142121  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1007452 - 1007520
Alignment:
Q  18 tgtggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactatt 86  Q
    |||||||||||||||||||| ||||||||||||||       ||||| |||| ||||||||||||||||    
T  1007452 tgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1022480 - 1022548
Alignment:
Q  18 tgtggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactatt 86  Q
    |||||||||||||||||||| ||||||||||||||       ||||| |||| ||||||||||||||||    
T  1022480 tgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 989621 - 989667
Alignment:
Q  243 ccagaagtctgcattgagagtttaatatggccttgttcttaatgtta 289  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||    
T  989621 ccagaagtctgcattgagagtttaatatcaccttgtttttaatgtta 989667  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 803295 - 803213
Alignment:
Q  1 attgtttgtgcttgatctgtggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcact 83  Q
    |||| |||||| |||| | |||||||||||||||||||||||| ||||||||       |||||||||| ||| |||||||||    
T  803295 attgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 4158002 - 4157937
Alignment:
Q  20 tggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactat 85  Q
    |||| ||||||||||| ||||||||||||||||       |||||||||| |||||||||||||||    
T  4158002 tggttatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactat 4157937  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 4157898 - 4157859
Alignment:
Q  124 ccaaggtaatatatgtttttgaggatgatcaagtgctgct 163  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  4157898 ccaaggcaatatatgtttttgaggatgatcaagtgttgct 4157859  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1937057 - 1937008
Alignment:
Q  1 attgtttgtgcttgatctgtggtgatgatgtttgggttatgaaggaatat 50  Q
    ||||||||||| || | | |||| ||||||||||||||||||||||||||    
T  1937057 attgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatat 1937008  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  25 atgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcact 83  Q
    ||||||||||| ||||||||||||||||       |||||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 4142081 - 4142049
Alignment:
Q  131 aatatatgtttttgaggatgatcaagtgctgct 163  Q
    |||||||||||||||||||||||||||| ||||    
T  4142081 aatatatgtttttgaggatgatcaagtgttgct 4142049  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 11081808 - 11081877
Alignment:
Q  22 gtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactattcctta 91  Q
    ||||||||||||||||||||||||| |||||       |||||||||| ||||||||| |||||||||||    
T  11081808 gtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattcctta 11081877  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23769723 - 23769634
Alignment:
Q  1 attgtttgtgcttgatctgtggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactattcctt 90  Q
    |||||||||||| ||| ||| || ||||||||||| ||||||||||||||||       | |||||||| ||||||||||||||| ||||    
T  23769723 attgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctt 23769634  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23819571 - 23819482
Alignment:
Q  1 attgtttgtgcttgatctgtggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactattcctt 90  Q
    |||||||||||| ||| ||| || ||||||||||| ||||||||||||||||       | |||||||| ||||||||||||||| ||||    
T  23819571 attgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctt 23819482  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 23766920 - 23766854
Alignment:
Q  20 tggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactatt 86  Q
    |||| ||||||||||| ||||||| ||||||||       |||||||||| ||||||||||||||||    
T  23766920 tggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 23816768 - 23816702
Alignment:
Q  20 tggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcactatt 86  Q
    |||| ||||||||||| ||||||| ||||||||       |||||||||| ||||||||||||||||    
T  23816768 tggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 20019830 - 20019767
Alignment:
Q  20 tggtgatgatgtttgggttatgaaggaatatggnnnnnnngagtcttggaataaattgttcact 83  Q
    |||| ||||||||||||| ||||||||||||||       |||||||||| |||||||||||||    
T  20019830 tggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 36577622 - 36577668
Alignment:
Q  243 ccagaagtctgcattgagagtttaatatggccttgttcttaatgtta 289  Q
    |||||||| |||||||||||||||||||  ||||| |||||||||||    
T  36577622 ccagaagtatgcattgagagtttaatatcaccttggtcttaatgtta 36577668  T

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