View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20985_low_26 (Length: 379)

Name: NF20985_low_26
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20985_low_26
NF20985_low_26
[»] chr4 (33 HSPs)
chr4 (11-361)||(21097039-21097387)
chr4 (11-230)||(4168384-4168605)
chr4 (11-230)||(22181064-22181284)
chr4 (100-227)||(637883-638010)
chr4 (100-230)||(26447321-26447451)
chr4 (11-256)||(27764240-27764492)
chr4 (100-257)||(45255974-45256131)
chr4 (107-227)||(38485590-38485710)
chr4 (11-164)||(18923351-18923504)
chr4 (117-230)||(36621627-36621740)
chr4 (100-216)||(51836999-51837116)
chr4 (141-222)||(50563679-50563760)
chr4 (180-227)||(1729604-1729651)
chr4 (24-85)||(38485503-38485564)
chr4 (169-222)||(6386519-6386572)
chr4 (191-256)||(50643743-50643808)
chr4 (191-230)||(1621902-1621941)
chr4 (191-230)||(10472524-10472563)
chr4 (191-230)||(11786001-11786040)
chr4 (191-230)||(11798168-11798207)
chr4 (191-230)||(13635725-13635764)
chr4 (191-230)||(15051136-15051175)
chr4 (191-230)||(25574128-25574167)
chr4 (191-230)||(29826606-29826645)
chr4 (191-230)||(30597726-30597765)
chr4 (191-230)||(36011870-36011909)
chr4 (191-230)||(46672466-46672505)
chr4 (191-230)||(49492512-49492551)
chr4 (191-230)||(51921265-51921304)
chr4 (196-230)||(30357834-30357868)
chr4 (11-49)||(51836939-51836977)
chr4 (191-219)||(26578189-26578217)
chr4 (194-230)||(49426060-49426096)
[»] chr1 (25 HSPs)
chr1 (11-256)||(18056784-18057029)
chr1 (11-228)||(45889624-45889843)
chr1 (11-217)||(23319903-23320111)
chr1 (100-256)||(22348039-22348195)
chr1 (100-218)||(179646-179764)
chr1 (117-215)||(30802437-30802535)
chr1 (100-217)||(8402220-8402337)
chr1 (141-230)||(37639368-37639457)
chr1 (141-230)||(35198131-35198220)
chr1 (141-230)||(16115877-16115966)
chr1 (191-230)||(11421621-11421660)
chr1 (191-228)||(34369689-34369726)
chr1 (194-230)||(4097911-4097947)
chr1 (191-230)||(18618862-18618901)
chr1 (191-230)||(24635953-24635992)
chr1 (191-230)||(25889028-25889067)
chr1 (191-230)||(31529665-31529704)
chr1 (191-230)||(33097432-33097471)
chr1 (191-230)||(44260545-44260584)
chr1 (191-230)||(49936937-49936976)
chr1 (191-230)||(50351830-50351869)
chr1 (192-230)||(51801734-51801772)
chr1 (196-228)||(21256777-21256809)
chr1 (194-230)||(23175525-23175561)
chr1 (191-227)||(28375494-28375530)
[»] chr8 (24 HSPs)
chr8 (11-256)||(32987266-32987510)
chr8 (11-230)||(15260669-15260890)
chr8 (11-257)||(39021974-39022222)
chr8 (100-230)||(8550530-8550660)
chr8 (100-228)||(4836610-4836738)
chr8 (100-228)||(4842055-4842183)
chr8 (100-228)||(7058142-7058270)
chr8 (117-230)||(7614094-7614207)
chr8 (141-230)||(15181817-15181906)
chr8 (160-256)||(1208709-1208805)
chr8 (105-176)||(2750105-2750176)
chr8 (191-258)||(42433699-42433766)
chr8 (191-230)||(10237381-10237420)
chr8 (191-230)||(19784298-19784337)
chr8 (191-230)||(30413941-30413980)
chr8 (191-230)||(34633321-34633360)
chr8 (191-230)||(41099209-41099248)
chr8 (191-230)||(43690667-43690706)
chr8 (11-49)||(4836550-4836588)
chr8 (11-49)||(4841995-4842033)
chr8 (196-230)||(9852297-9852331)
chr8 (196-230)||(34648133-34648167)
chr8 (196-228)||(35302591-35302623)
chr8 (194-230)||(40247288-40247324)
[»] scaffold0097 (1 HSPs)
scaffold0097 (11-256)||(13613-13858)
[»] chr7 (28 HSPs)
chr7 (11-256)||(30428873-30429118)
chr7 (11-230)||(46024053-46024274)
chr7 (100-228)||(46573409-46573537)
chr7 (100-256)||(15974845-15975001)
chr7 (117-221)||(33797966-33798070)
chr7 (141-230)||(5757413-5757502)
chr7 (141-227)||(32090607-32090693)
chr7 (160-257)||(48690894-48690991)
chr7 (160-218)||(48691030-48691088)
chr7 (169-230)||(48305262-48305323)
chr7 (160-230)||(28396748-28396818)
chr7 (169-230)||(44141229-44141290)
chr7 (157-227)||(12279774-12279844)
chr7 (191-230)||(763724-763763)
chr7 (191-230)||(16933244-16933283)
chr7 (191-230)||(16938627-16938666)
chr7 (191-230)||(30884222-30884261)
chr7 (191-230)||(31660096-31660135)
chr7 (191-230)||(34875516-34875555)
chr7 (191-230)||(41911109-41911148)
chr7 (191-230)||(46358547-46358586)
chr7 (157-227)||(12279670-12279740)
chr7 (187-217)||(27335625-27335655)
chr7 (11-49)||(28396892-28396930)
chr7 (11-49)||(48691162-48691200)
chr7 (191-228)||(20000674-20000711)
chr7 (194-230)||(35736975-35737011)
chr7 (194-230)||(39007652-39007688)
[»] chr2 (15 HSPs)
chr2 (11-256)||(20709774-20710019)
chr2 (105-256)||(18298025-18298176)
chr2 (100-256)||(25192892-25193048)
chr2 (141-214)||(4281738-4281811)
chr2 (160-230)||(4579787-4579857)
chr2 (141-230)||(25995313-25995402)
chr2 (160-219)||(14551288-14551347)
chr2 (164-230)||(5098743-5098809)
chr2 (191-230)||(7487254-7487293)
chr2 (191-230)||(15016566-15016605)
chr2 (191-230)||(39355062-39355101)
chr2 (11-49)||(4579675-4579713)
chr2 (195-227)||(2263603-2263635)
chr2 (194-230)||(39548069-39548105)
chr2 (141-201)||(43822409-43822469)
[»] scaffold0194 (1 HSPs)
scaffold0194 (11-221)||(27642-27854)
[»] chr3 (28 HSPs)
chr3 (100-230)||(52987559-52987689)
chr3 (105-259)||(51362352-51362506)
chr3 (100-230)||(50754032-50754162)
chr3 (100-230)||(39099223-39099353)
chr3 (105-256)||(19385229-19385380)
chr3 (100-228)||(7045210-7045337)
chr3 (100-257)||(8718100-8718257)
chr3 (100-257)||(9069987-9070144)
chr3 (119-227)||(16277342-16277450)
chr3 (11-85)||(8718282-8718356)
chr3 (11-85)||(9070169-9070243)
chr3 (141-228)||(23699356-23699443)
chr3 (141-228)||(23717811-23717898)
chr3 (141-228)||(23736267-23736354)
chr3 (157-218)||(17627197-17627258)
chr3 (191-230)||(3475407-3475446)
chr3 (191-230)||(9595980-9596019)
chr3 (191-230)||(19284698-19284737)
chr3 (191-230)||(26662538-26662577)
chr3 (191-230)||(33414013-33414052)
chr3 (191-230)||(46237758-46237797)
chr3 (191-230)||(47335059-47335098)
chr3 (11-49)||(19385168-19385206)
chr3 (11-49)||(51362288-51362326)
chr3 (196-230)||(51846785-51846819)
chr3 (191-228)||(47728417-47728454)
chr3 (191-228)||(53594997-53595034)
chr3 (194-230)||(54379190-54379226)
[»] chr5 (21 HSPs)
chr5 (100-230)||(13362796-13362926)
chr5 (11-256)||(23335522-23335772)
chr5 (100-227)||(2826976-2827103)
chr5 (100-256)||(28070062-28070218)
chr5 (11-230)||(25017052-25017256)
chr5 (140-230)||(16668743-16668833)
chr5 (141-217)||(18465506-18465582)
chr5 (11-85)||(13362951-13363024)
chr5 (160-227)||(34329156-34329223)
chr5 (41-85)||(42512347-42512391)
chr5 (186-230)||(42512225-42512269)
chr5 (141-216)||(8948930-8949003)
chr5 (106-157)||(42512273-42512324)
chr5 (191-230)||(13553010-13553049)
chr5 (191-230)||(14940356-14940395)
chr5 (191-230)||(15416691-15416730)
chr5 (192-230)||(4674987-4675025)
chr5 (11-49)||(28070012-28070050)
chr5 (164-230)||(33868182-33868248)
chr5 (191-228)||(26637837-26637874)
chr5 (194-230)||(16552642-16552678)
[»] chr6 (15 HSPs)
chr6 (105-222)||(24737605-24737722)
chr6 (100-258)||(33346280-33346438)
chr6 (100-218)||(877246-877364)
chr6 (141-230)||(29157252-29157341)
chr6 (141-217)||(18611228-18611304)
chr6 (157-256)||(34399641-34399740)
chr6 (158-256)||(15034942-15035040)
chr6 (181-230)||(35119261-35119310)
chr6 (191-230)||(1449569-1449608)
chr6 (191-230)||(1536896-1536935)
chr6 (191-230)||(6900830-6900869)
chr6 (191-230)||(31216689-31216728)
chr6 (11-49)||(24737542-24737580)
chr6 (196-230)||(30908679-30908713)
chr6 (198-230)||(12394387-12394419)
[»] scaffold0238 (2 HSPs)
scaffold0238 (107-256)||(25148-25297)
scaffold0238 (11-49)||(25074-25112)
[»] scaffold0337 (1 HSPs)
scaffold0337 (157-227)||(7046-7116)
[»] scaffold0544 (1 HSPs)
scaffold0544 (186-230)||(10670-10714)
[»] scaffold0571 (1 HSPs)
scaffold0571 (191-230)||(676-715)
[»] scaffold0045 (1 HSPs)
scaffold0045 (191-230)||(33711-33750)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 21097387 - 21097039
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| ||||    
T  21097387 atcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagagagggagagctttatgtt 21097288  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||| ||| | |||| ||  ||||||| ||||||| ||||||||| |||||||||||||    
T  21097287 ttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaaactagatctaatggttgtgaagt 21097188  T
Q  209 gtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcccttggatcacacgaagacaacatgtaaggcgnnnnnnnnnnnccttcgcaaa 308  Q
    |||||| ||||||| |||||||       |||||   |||||||||||||||||||||  |||||||||||||||||||            |||||||||    
T  21097187 gtttatacacggtgcataaggatttccttatgcacggtaacttttgcccttggatcacttgaagacaacatgtaaggcgtttttttt----cttcgcaaa 21097092  T
Q  309 acgtggaaacacaaaatatcgaaaagatgtgcagtgaaaaatcatggaataca 361  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  21097091 acgtggaaacacaaaatatcgaaaagatgtgtagttaaaaatcatggaataca 21097039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 4168605 - 4168384
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| ||||    
T  4168605 atcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagatagagtgaaagctttatgtt 4168506  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||| |||||| |||||||| |||||||| |||||||||||||| |||| |||||||| | ||||| |||||||||||||||||||||||    
T  4168505 ttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagt 4168406  T
Q  209 gtttatgcacggtgtataagga 230  Q
    |||||||||||||| |||||||    
T  4168405 gtttatgcacggtgcataagga 4168384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 22181064 - 22181284
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||                |||| ||||    
T  22181064 atcatcatgtgtggccggaagagatgaaaactcatttgagttcttcgttttcttttccagaatgttgaaa-ttgtagagagagaggaaaagctttatgtt 22181162  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||| ||||| ||||||||| |||||||| |||||||||||||| |||| |||||||| ||||||| |||| ||||||||||||||||||    
T  22181163 ttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacgtgtacactaaatctgatggttgtgaagt 22181262  T
Q  209 gtttatgcacggtgtataagga 230  Q
     ||||||||||||| |||||||    
T  22181263 ttttatgcacggtgcataagga 22181284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 638010 - 637883
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||||| || |||| ||||||||||||||    
T  638010 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtacactagatctgatgg 637911  T
Q  200 ttgtgaagtgtttatgcacggtgtataa 227  Q
    ||||||||||||||||||||||| ||||    
T  637910 ttgtgaagtgtttatgcacggtgcataa 637883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 26447321 - 26447451
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||||  ||||||| ||||||| ||||||||||||||    
T  26447321 ctttatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgtgaagcctagaattattacacgtgtacactagatctgatgg 26447420  T
Q  200 ttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||| |||||||    
T  26447421 ttgtgaagtgtttatgcacggtgcataagga 26447451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 27764492 - 27764240
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttc---gttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn----cttt 103  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||                   ||||    
T  27764492 atcatcatgtgtggccggaagagatgaagactcatctgaattcttcttcgttttctttttcagaatgttgaaaattggagagagagagagggagaacttt 27764393  T
Q  104 gtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgt 203  Q
     |||||||||||||||||| |||||||||||| |  |||||||| |||||||||||||||| || |||||||| ||||||| |||||||||||||||||     
T  27764392 atgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatctgatggttgc 27764293  T
Q  204 gaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||||||||||| |||||||       ||||| |||||||||||||    
T  27764292 gaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 27764240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 45256131 - 45255974
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||  |||||||||| ||||||| |||||||| ||||||| |||| ||||||| |    
T  45256131 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttgatgtagtttgaaaagcctaggattattacacgtgtacactatatctgatag 45256032  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccc 257  Q
    ||||||||||||||||||||||| |||||||       ||||| ||||||||||||||    
T  45256031 ttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccc 45255974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 38485590 - 38485710
Alignment:
Q  107 ttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaa 206  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||| |||||||| ||||||| | |||||||||||||||||||    
T  38485590 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgtacattagatctgatggttgtgaa 38485689  T
Q  207 gtgtttatgcacggtgtataa 227  Q
    | |||||||||||||| ||||    
T  38485690 gcgtttatgcacggtgcataa 38485710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 18923504 - 18923351
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||               ||| ||||||    
T  18923504 atcatcatgtgtggtcggaagagatgaagactcatctgagttcttcgttttctttttcagaatgttgaaaattgtagagagagggatagttttatgtttt 18923405  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagc 164  Q
    ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  18923404 agtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagc 18923351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 36621627 - 36621740
Alignment:
Q  117 agaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgc 216  Q
    |||||| ||||||||||||||| |||||||| ||||||||| |||||| || |||||||| ||||||| | |||||||||||||||||||||||||||||    
T  36621627 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 36621726  T
Q  217 acggtgtataagga 230  Q
    |||||| |||||||    
T  36621727 acggtgcataagga 36621740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 51836999 - 51837116
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaa-tgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatg 198  Q
    |||| |||||||||||||||||| ||||||| ||| |||| |||||||| ||||||||||||||||||| |||||||| ||||||| | || ||||||||    
T  51836999 ctttatgttttagtgagagaaatgtttgaagtaaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacattaaatctgatg 51837098  T
Q  199 gttgtgaagtgtttatgc 216  Q
    |||||||||| |||||||    
T  51837099 gttgtgaagtatttatgc 51837116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 50563679 - 50563760
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtg 222  Q
    ||||||| |||||||||||||| ||||  ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtg 50563760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 1729604 - 1729651
Alignment:
Q  180 gtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1729604 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataa 1729651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 38485503 - 38485564
Alignment:
Q  24 gccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgt 85  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||||||    
T  38485503 gccggaagagatgaagactcatatgagtttttcgtttttttttccataatattgaaaattgt 38485564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 6386519 - 6386572
Alignment:
Q  169 gattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtg 222  Q
    |||||||| ||||||  |||| ||||||||||||||||||||||||||| ||||    
T  6386519 gattattacacgtgtccactaaatctgatggttgtgaagtgtttatgcagggtg 6386572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 50643808 - 50643743
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||| |||||||||||||||||||| |||||||       ||||| |||||||||||||    
T  50643808 atctgatggttatgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 50643743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 1621941 - 1621902
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  1621941 atctgatggttgtgatgtgtttatgcacggtgcataagga 1621902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 10472563 - 10472524
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  10472563 atctgatggttgtgaaatgtttatgcacggtgcataagga 10472524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 11786040 - 11786001
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  11786040 atctgatggttgtgatgtgtttatgcacggtgcataagga 11786001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 11798207 - 11798168
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  11798207 atctgatggttgtgatgtgtttatgcacggtgcataagga 11798168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 13635725 - 13635764
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  13635725 atctgatggttgtgatgtgtttatgcacggtgcataagga 13635764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 15051136 - 15051175
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  15051136 atctgatggttgtgatgtgtttatgcacggtgcataagga 15051175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 25574128 - 25574167
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  25574128 atctgatggttgtgaagtgtttatgcagggtgcataagga 25574167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 29826606 - 29826645
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  29826606 atctgatggttgtgaagtgcttatgcacggtgcataagga 29826645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 30597765 - 30597726
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  30597765 atctgatggttgtgatgtgtttatgcacggtgcataagga 30597726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 36011909 - 36011870
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  36011909 atctgatggttgtgatgtgtttatgcacggtgcataagga 36011870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 46672505 - 46672466
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  46672505 atctgatggttgtgatgtgtttatgcacggtgcataagga 46672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 49492512 - 49492551
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  49492512 atctgatggttgtgatgtgtttatgcacggtgcataagga 49492551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 51921265 - 51921304
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  51921265 atctgatggttgtgatgtgtttatgcacggtgcataagga 51921304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 30357868 - 30357834
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||||||    
T  30357868 atggttgtgaagtgtttatgcacggtgcataagga 30357834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 51836939 - 51836977
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  51836939 atcatcatgtgtggccggaagagatgaagactcatctga 51836977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 26578189 - 26578217
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacg 219  Q
    |||||||||||||||||||||||||||||    
T  26578189 atctgatggttgtgaagtgtttatgcacg 26578217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 49426060 - 49426096
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||| |||||||||||||||| |||||||    
T  49426060 tgatggttgtgatgtgtttatgcacggtgcataagga 49426096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 18057029 - 18056784
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||               ||| ||||||    
T  18057029 atcatcatgtgtggccggaagagataaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagagggagagttttatgtttt 18056930  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgt 210  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  18056929 agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgt 18056830  T
Q  211 ttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||| |||||||       ||||| |||||||||||||    
T  18056829 ttatgcacggtgcataaggatttccttatgcaccataacttttgcc 18056784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 45889843 - 45889624
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||                |||| ||||    
T  45889843 atcatcatttgtggccggaagagatgaagactcatctgagttcttcgttttctttttcagaatattgaaaattgtagagagagagggagaactttatgtt 45889744  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||| || |    
T  45889743 ttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacacatgtatactagatctgatggttgtaaaat 45889644  T
Q  209 gtttatgcacggtgtataag 228  Q
    |||||||||||||| |||||    
T  45889643 gtttatgcacggtggataag 45889624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 23319903 - 23320111
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||                |||| ||||    
T  23319903 atcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaattttgaaaatagtagagaaagagggatagctttatgtt 23320002  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  23320003 ttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagt 23320102  T
Q  209 gtttatgca 217  Q
    |||||||||    
T  23320103 gtttatgca 23320111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 22348195 - 22348039
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| ||||||    
T  22348195 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatatgatgg 22348096  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||||||||| ||||| |||||||       ||||| |||||||||||||    
T  22348095 ttgtgaagtgtttatgcgcggtgcataaggatttccttatgcaccataacttttgcc 22348039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 179764 - 179646
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |  |||||||| ||||||| ||||||||||||||    
T  179764 ctttatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttgagaagcttgggattattacacgtgtacactagatctgatgg 179665  T
Q  200 ttgtgaagtgtttatgcac 218  Q
    |||||||||||||||||||    
T  179664 ttgtgaagtgtttatgcac 179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 30802535 - 30802437
Alignment:
Q  117 agaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatg 215  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  30802535 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 8402220 - 8402337
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||||| |||| |||||||| | ||||| ||||||||||||||    
T  8402220 ctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttgagaaacctaggattattacatgtgtacactagatctgatgg 8402319  T
Q  200 ttgtgaagtgtttatgca 217  Q
    || |||||||||||||||    
T  8402320 ttatgaagtgtttatgca 8402337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 37639457 - 37639368
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| ||||||||||||||| |||  ||||||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataagga 37639368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 35198131 - 35198220
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| ||||||||||| ||| ||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| |||| |||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgtttatgcagggtgcataagga 35198220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 16115966 - 16115877
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| ||||||||| ||||| ||  |||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||    
T  16115966 ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcataagga 16115877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 11421660 - 11421621
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11421660 atctgatggttgtgaagtgtttatgcacggtgcataagga 11421621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 34369726 - 34369689
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34369726 atctgatggttgtgaagtgtttatgcacggtgcataag 34369689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 4097911 - 4097947
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4097911 tgatggttgtgaagtgtttatgcacggtgcataagga 4097947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 18618901 - 18618862
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  18618901 atctgatggttgtgatgtgtttatgcacggtgcataagga 18618862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 24635992 - 24635953
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  24635992 atctgatggttgtgatgtgtttatgcacggtgcataagga 24635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 25889028 - 25889067
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  25889028 atctgatggttgtgatgtgtttatgcacggtgcataagga 25889067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 31529665 - 31529704
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  31529665 atctgatggttgtgaagtgtttatgcatggtgcataagga 31529704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 33097471 - 33097432
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  33097471 atctgatggttgtgaagtgtttatgcagggtgcataagga 33097432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 44260584 - 44260545
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  44260584 atctgatggttgtgaagtgtttatgcagggtgcataagga 44260545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 49936937 - 49936976
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  49936937 atctgatggttgtgatgtgtttatgcacggtgcataagga 49936976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 50351869 - 50351830
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  50351869 atctgatggttgtgatgtgtttatgcacggtgcataagga 50351830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 51801734 - 51801772
Alignment:
Q  192 tctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  51801734 tctgatggttgtgaagtgtttatgcagggtgcataagga 51801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 21256777 - 21256809
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||||||| |||||    
T  21256777 atggttgtgaagtgtttatgcacggtgcataag 21256809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 23175525 - 23175561
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| | |||||||    
T  23175525 tgatggttgtgaagtgtttatgcacggcgcataagga 23175561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 28375530 - 28375494
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  28375530 atctgatggttgtgatgtgtttatgcacggtgcataa 28375494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 32987266 - 32987510
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||              |||| ||||||    
T  32987266 atcatcatgtgtggccggaa-agatgaagactcatatgagttcttcgttttcttttccagaatgttgaaaattgtagagagagggagagctttatgtttt 32987364  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgt 210  Q
    ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  32987365 agttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgt 32987464  T
Q  211 ttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||| |||||||       ||||| |||||||||||||    
T  32987465 ttatgcacggtgcataaggatttccttatgcaccataacttttgcc 32987510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 15260669 - 15260890
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnc--tttgtgtt 108  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||| | ||    
T  15260669 atcatcatatgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagagagggagagttttatatt 15260768  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||| ||||||| ||||||| |||||||||||||||    
T  15260769 ttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtacactagatttgatggttgtgaagt 15260868  T
Q  209 gtttatgcacggtgtataagga 230  Q
    |||||||||||||| |||||||    
T  15260869 gtttatgcacggtgcataagga 15260890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 39022222 - 39021974
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                |||| ||||    
T  39022222 atcatcatgtgtggccggaagagatgaagactcatctaagttcttcgttttcttttccagaatgttgaaaattgtagagagagagggagagctttatgtt 39022123  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| || |||| ||||||||||||| |||||||||    
T  39022122 ttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtacactagatctgatgattgtgaagt 39022023  T
Q  209 gtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccc 257  Q
    |||||||||||||| |||||||       ||||| ||||||||||||||    
T  39022022 gtttatgcacggtgcataaggatttccttatgcaccataacttttgccc 39021974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 8550660 - 8550530
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| || |||||||| ||||||| ||||||||||||||    
T  8550660 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcttatgattattacacgtgtacactagatctgatgg 8550561  T
Q  200 ttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||| |||||||    
T  8550560 ttgtgaagtgtttatgcacggtgcataagga 8550530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 4836610 - 4836738
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| ||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||| |||| || |||||||| ||||||| ||||||||||||||    
T  4836610 ctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatgg 4836709  T
Q  200 ttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||| |||||    
T  4836710 ttgtgaagtgtttatgcacggtgcataag 4836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 4842055 - 4842183
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| ||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||| |||| || |||||||| ||||||| ||||||||||||||    
T  4842055 ctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatgg 4842154  T
Q  200 ttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||| |||||    
T  4842155 ttgtgaagtgtttatgcacggtgcataag 4842183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 7058270 - 7058142
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||| ||| |||||||| ||||||| |||||||| |||||    
T  7058270 ctttatgttttagtgagagaagtgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatcggatgg 7058171  T
Q  200 ttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||| |||||    
T  7058170 ttgtgaagtgtttatgcacggtgcataag 7058142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 7614207 - 7614094
Alignment:
Q  117 agaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgc 216  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||    
T  7614207 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 7614108  T
Q  217 acggtgtataagga 230  Q
    | |||| |||||||    
T  7614107 atggtgcataagga 7614094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 15181906 - 15181817
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||| |||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgcagggtgcataagga 15181817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 1208805 - 1208709
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||| |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||| |||||||       ||||| |||||||||||||    
T  1208805 gaagcctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 1208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 2750176 - 2750105
Alignment:
Q  105 tgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattatta 176  Q
    |||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||||| ||| ||||||||    
T  2750176 tgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattatta 2750105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 42433766 - 42433699
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccct 258  Q
    ||||||||||||||||||| |||||||||||| |||||||       ||||| |||||||||||||||    
T  42433766 atctgatggttgtgaagtgcttatgcacggtgcataaggatttccttatgcaccataacttttgccct 42433699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 10237420 - 10237381
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  10237420 atctgatggttgtgatgtgtttatgcacggtgcataagga 10237381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 19784337 - 19784298
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  19784337 atctgatggttgtgatgtgtttatgcacggtgcataagga 19784298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 30413980 - 30413941
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  30413980 atctgatggttgtgatgtgtttatgcacggtgcataagga 30413941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 34633321 - 34633360
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  34633321 atctgatggttgtgatgtgtttatgcacggtgcataagga 34633360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 41099248 - 41099209
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41099248 atctgatggttgtgatgtgtttatgcacggtgcataagga 41099209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 43690706 - 43690667
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  43690706 atctgatggttgtgatgtgtttatgcacggtgcataagga 43690667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4836550 - 4836588
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  4836550 atcatcatgtgtggccggaagagatgaagactcatctga 4836588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4841995 - 4842033
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  4841995 atcatcatgtgtggccggaagagatgaagactcatctga 4842033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 9852331 - 9852297
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||||||    
T  9852331 atggttgtgaagtgtttatgcacggtgcataagga 9852297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 34648133 - 34648167
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||||||    
T  34648133 atggttgtgaagtgtttatgcacggtgcataagga 34648167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 35302591 - 35302623
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||||||| |||||    
T  35302591 atggttgtgaagtgtttatgcacggtgcataag 35302623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 40247288 - 40247324
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||| |||| |||||||    
T  40247288 tgatggttgtgaagtgtttatgcagggtgcataagga 40247324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 13858 - 13613
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||              |||| ||||||    
T  13858 atcatcatgtgtgaccggaagagatgaagactcatctgagttcttcgttttcttttccagagagttgaaaattgtagagagagggagaactttatgtttt 13759  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgt 210  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||| || |||||||| | ||||| |||||||||||||||||||||||||    
T  13758 agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgt 13659  T
Q  211 ttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||| |||||||       ||||| |||||||||||||    
T  13658 ttatgcacggtggataaggatttccttatgcaccataacttttgcc 13613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 30429118 - 30428873
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| | | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||              |||| ||||||    
T  30429118 atcatcatgtatggccggaagagatgaagactcgtctgagttcttcgttttcttttctagaatgttgaaaattgtagagagagggggagctttatgtttt 30429019  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgt 210  Q
    ||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||    
T  30429018 agtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatgt 30428919  T
Q  211 ttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||| |||||||       ||||| |||||||||||||    
T  30428918 ttatgcacggtgcataaggatttccttatgcaccataacttttgcc 30428873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 46024274 - 46024053
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn--ctttgtgtt 108  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||                |||| ||||    
T  46024274 atcatcatgtgtggtcggaagagatgaagactaatctgagttcttcgttttcttttccaaaatgttgaaaattgtagagatagagggagaactttatgtt 46024175  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||    
T  46024174 ttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattacacgtgtacactatatctgatggttgtgaagt 46024075  T
Q  209 gtttatgcacggtgtataagga 230  Q
    |||||||||||||| |||||||    
T  46024074 gtttatgcacggtgcataagga 46024053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 46573409 - 46573537
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  46573409 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatgg 46573508  T
Q  200 ttgtgaagtgtttatgcacggtgtataag 228  Q
    |||||||||||||||  |||||| |||||    
T  46573509 ttgtgaagtgtttatatacggtgcataag 46573537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 15974845 - 15975001
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||| | ||||| |||| || ||||||    
T  15974845 ctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatatgatgg 15974944  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||||||||||||||| |||||||       ||||| |||||||||||||    
T  15974945 ttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 15975001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 33798070 - 33797966
Alignment:
Q  117 agaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgc 216  Q
    |||||| ||||||||||||||| ||||||||  |||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  33798070 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgc 33797971  T
Q  217 acggt 221  Q
    |||||    
T  33797970 acggt 33797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 5757502 - 5757413
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| ||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 5757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 32090693 - 32090607
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||| |||| |||||||||| |||| ||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgcagggtgcataa 32090607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 48690991 - 48690894
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccc 257  Q
    |||||||| |||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||       ||||| ||||||||||||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataaggatttctttatgcaccataacttttgccc 48690894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 48691088 - 48691030
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcac 218  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtctatgcac 48691030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 48305323 - 48305262
Alignment:
Q  169 gattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||| |||||||| |||| |||| |||||||||||||||||| |||||||    
T  48305323 gattattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacggtgcataagga 48305262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 28396818 - 28396748
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||| ||||||||  | |||| ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  28396818 gaagcctaggattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataagga 28396748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 44141229 - 44141290
Alignment:
Q  169 gattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||| |||||||    
T  44141229 gattattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataagga 44141290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 12279844 - 12279774
Alignment:
Q  157 tgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    ||||| ||||| ||| |||| |||| || ||||||||| ||||||||||||| ||||||||||||| ||||    
T  12279844 tgagaggcctaggatcattacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataa 12279774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 763763 - 763724
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  763763 atctgatggttgtgacgtgtttatgcacggtgcataagga 763724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 16933244 - 16933283
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  16933244 atctgatggttgtgatgtgtttatgcacggtgcataagga 16933283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 16938627 - 16938666
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  16938627 atctgatggttgtgatgtgtttatgcacggtgcataagga 16938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 30884222 - 30884261
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  30884222 atctgatggttgtgatgtgtttatgcacggtgcataagga 30884261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 31660135 - 31660096
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  31660135 atctgatggttgtgatgtgtttatgcacggtgcataagga 31660096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 34875555 - 34875516
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  34875555 atctgatggttgtgaagtgtttatgcagggtgcataagga 34875516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 41911109 - 41911148
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41911109 atctgatggttgtgatgtgtttatgcacggtgcataagga 41911148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 46358586 - 46358547
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  46358586 atctgatggttgtgatgtgtttatgcacggtgcataagga 46358547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 12279740 - 12279670
Alignment:
Q  157 tgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    ||||| ||||| ||| |||| ||||||| ||| ||||| ||||||||||||| ||||| ||||||| ||||    
T  12279740 tgagaggcctaggatcattacacgtgtacactggatctaatggttgtgaagtctttatacacggtgcataa 12279670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 27335625 - 27335655
Alignment:
Q  187 ctagatctgatggttgtgaagtgtttatgca 217  Q
    |||||||||||||||||||||||||||||||    
T  27335625 ctagatctgatggttgtgaagtgtttatgca 27335655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 28396930 - 28396892
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  28396930 atcatcatgtgtggccggaagagatgaagactcatctga 28396892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 48691200 - 48691162
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  48691200 atcatcatgtgtggccggaagagatgaagactcatctga 48691162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 20000674 - 20000711
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  20000674 atctgatggttgtgatgtgtttatgcacggtgcataag 20000711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 35737011 - 35736975
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||| |||||||||||||||| |||||||    
T  35737011 tgatggttgtgatgtgtttatgcacggtgcataagga 35736975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 39007652 - 39007688
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39007652 tgatggttgtgaagtgtttatgcagggtgcataagga 39007688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 20710019 - 20709774
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||              |||| ||||||    
T  20710019 atcatcatgtgtgaccggaagagatgaagactcatctgagttcttcgttttcttttccagagagttgaaaattgtagagagagggagaactttatgtttt 20709920  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgt 210  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||| || |||||||| | ||||| |||||||||||||||||||||||||    
T  20709919 agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgt 20709820  T
Q  211 ttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||| |||||||       ||||| |||||||||||||    
T  20709819 ttatgcacggtggataaggatttccttatgcaccataacttttgcc 20709774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 18298025 - 18298176
Alignment:
Q  105 tgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtg 204  Q
    |||||||||||||||||   |||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||    
T  18298025 tgttttagtgagagaaacgcttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtg 18298124  T
Q  205 aagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||||||||| |||||||       ||||| |||||||||||||    
T  18298125 aagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 18298176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 25193048 - 25192892
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||  ||||||| ||||||| ||||||||| ||||    
T  25193048 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcctagaattattacacgtgtacactagatctaatgg 25192949  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||||||||||||||| |||||||       ||||| |||||||||||||    
T  25192948 ttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 25192892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 4281738 - 4281811
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttat 214  Q
    |||||||  ||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 4579787 - 4579857
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||| |||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataagga 4579857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 25995402 - 25995313
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| ||||| |||||| |||||| |||||||| ||||||| |||| |||||||||||||||||| ||||||||  ||| |||||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatgcagagtgcataagga 25995313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 14551288 - 14551347
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacg 219  Q
    |||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaagtgtttatgcacg 14551347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 5098809 - 5098743
Alignment:
Q  164 cctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||| |||||||| ||||||| | || || |||||||||||||||||||||||| |||| |||||||    
T  5098809 cctaggattattacacgtgtacaataaatttgatggttgtgaagtgtttatgcagggtgcataagga 5098743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 7487254 - 7487293
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  7487254 atctgatggttgtgatgtgtttatgcacggtgcataagga 7487293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 15016566 - 15016605
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  15016566 atctgatggttgtgatgtgtttatgcacggtgcataagga 15016605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 39355101 - 39355062
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  39355101 atctgatggttgtgatgtgtttatgcacggtgcataagga 39355062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4579675 - 4579713
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  4579675 atcatcatgtgtggccggaagagatgaagactcatctga 4579713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 2263635 - 2263603
Alignment:
Q  195 gatggttgtgaagtgtttatgcacggtgtataa 227  Q
    |||||||||||||||||||||||||||| ||||    
T  2263635 gatggttgtgaagtgtttatgcacggtgcataa 2263603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 39548105 - 39548069
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39548105 tgatggttgtgaagtgtttatgcagggtgcataagga 39548069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 43822469 - 43822409
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggtt 201  Q
    ||||||| ||||| ||| |||| |||| |||||| | ||||||| ||||||||||||||||    
T  43822469 ttgattttgtgtaatttaagaaacctaggattatcacacgtgtacactagatctgatggtt 43822409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 27854 - 27642
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnc--tttgtgtt 108  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||| ||||    
T  27854 atcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagaaagagggagagatttatgtt 27755  T
Q  109 ttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagt 208  Q
    |||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||  ||||||| ||||||| ||||||||| || ||||||||||    
T  27754 ttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattacacgtgtacactagatcttatagttgtgaagt 27655  T
Q  209 gtttatgcacggt 221  Q
    |||||||||||||    
T  27654 gtttatgcacggt 27642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 52987559 - 52987689
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  52987559 ctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatgg 52987658  T
Q  200 ttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||| |||||||    
T  52987659 ttgtgaagtgtttatgcacggtgcataagga 52987689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 51362352 - 51362506
Alignment:
Q  105 tgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtg 204  Q
    |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||    
T  51362352 tgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactaaatctgatggttgtg 51362451  T
Q  205 aagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccctt 259  Q
    |||||||||||||||||| |||||||       ||||| ||||||||||||||||    
T  51362452 aagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccctt 51362506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 50754162 - 50754032
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||| | |||||| |||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  50754162 ctttatgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatgg 50754063  T
Q  200 ttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||| |||||||    
T  50754062 ttgtgaagtgtttatgcacggtgcataagga 50754032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 39099353 - 39099223
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  39099353 ctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacactagatctgatgg 39099254  T
Q  200 ttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| | ||||||||||||| |||||||    
T  39099253 ttgtgaaatatttatgcacggtgcataagga 39099223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 19385229 - 19385380
Alignment:
Q  105 tgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtg 204  Q
    |||||||||||| |||||  |||||||||||||| ||||||||  ||||||||||||||||||  ||||||| ||||||| |||| ||||||||||||||    
T  19385229 tgttttagtgagggaaatgattgaagcaaatgaagtttgatttgatgtagtttgagaagcctagaattattacacgtgtacactaaatctgatggttgtg 19385328  T
Q  205 aagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||||||||| |||||||       ||||| |||||||||||||    
T  19385329 aagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 19385380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 7045210 - 7045337
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| |||||||||||| || ||||||||  |||||| ||||||||||| |||||||| ||||||| ||||||||||||||    
T  7045210 ctttatgttttagtgagagaaatgtttgaagcaaat-aagtttgatttgatgtagtctgagaagcctacgattattacacgtgtacactagatctgatgg 7045308  T
Q  200 ttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||| ||||||| |||||    
T  7045309 ttgtgaagtgtttatacacggtgcataag 7045337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 8718257 - 8718100
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||| || |||||||| |||||||| ||||||||| ||||||||| |||||||| || |||| ||||||||||||||    
T  8718257 ctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatgg 8718158  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccc 257  Q
    ||||||||| |||||| |||||| |||||||       ||||| ||||||||||||||    
T  8718157 ttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataacttttgccc 8718100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 9070144 - 9069987
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||| || |||||||| |||||||| ||||||||| ||||||||| |||||||| || |||| ||||||||||||||    
T  9070144 ctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatgg 9070045  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccc 257  Q
    ||||||||| |||||| |||||| |||||||       ||||| ||||||||||||||    
T  9070044 ttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataacttttgccc 9069987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 16277342 - 16277450
Alignment:
Q  119 aaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcac 218  Q
    |||| |||||| |||||||| |||||||| |||||||||||||||| || |||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  16277342 aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcac 16277441  T
Q  219 ggtgtataa 227  Q
    |||| ||||    
T  16277442 ggtgcataa 16277450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 8718356 - 8718282
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgt 85  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8718356 atcatcatgtgtggccggaagagatgaagactcatctgatttcttcgttttcttttccagaatgttgaaaattgt 8718282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 9070243 - 9070169
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgt 85  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9070243 atcatcatgtgtggccggaagagatgaagactcatctgatttcttcgttttcttttccagaatgttgaaaattgt 9070169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 23699443 - 23699356
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    |||||||  |||||||||| ||||||| |||||||| ||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  23699443 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataag 23699356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 23717898 - 23717811
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    |||||||  |||||||||| ||||||| |||||||| ||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  23717898 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataag 23717811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 23736354 - 23736267
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    |||||||  |||||||||| ||||||| |||||||| ||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  23736354 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataag 23736267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 17627197 - 17627258
Alignment:
Q  157 tgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcac 218  Q
    |||||| ||||  ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17627197 tgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 17627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 3475407 - 3475446
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  3475407 atctgatggttgtgatgtgtttatgcacggtgcataagga 3475446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 9595980 - 9596019
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  9595980 atctgatggttgtgatgtgtttatgcacggtgcataagga 9596019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 19284737 - 19284698
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  19284737 atctgatggttgtgatgtgtttatgcacggtgcataagga 19284698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 26662538 - 26662577
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  26662538 atctgatggttgtgatgtgtttatgcacggtgcataagga 26662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 33414013 - 33414052
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  33414013 atctgatggttgtgatgtgtttatgcacggtgcataagga 33414052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 46237758 - 46237797
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  46237758 atctgatggttgtgatgtgtttatgcacggtgcataagga 46237797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 47335098 - 47335059
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  47335098 atctgatggttgtgatgtgtttatgcacggtgcataagga 47335059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 19385168 - 19385206
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  19385168 atcatcatctgtggccggaagagatgaagactcatctga 19385206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 51362288 - 51362326
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  51362288 atcatcatgtgtggccggaagagatgaagactcatctga 51362326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 51846785 - 51846819
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||||||    
T  51846785 atggttgtgaagtgtttatgcacggtgcataagga 51846819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 47728454 - 47728417
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  47728454 atctgatggttgtgaagtgtttatgcagggtgcataag 47728417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 53595034 - 53594997
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  53595034 atctgatggttgtgaagtgtttatgcagggtgcataag 53594997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 54379226 - 54379190
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||| |||||||||||||||| |||||||    
T  54379226 tgatggttgtgatgtgtttatgcacggtgcataagga 54379190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 13362926 - 13362796
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |||| || ||||||||||||||    
T  13362926 ctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacactagatctgatgg 13362827  T
Q  200 ttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||| |||||||    
T  13362826 ttgtgaagtgtttatgcacggtgcataagga 13362796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 23335522 - 23335772
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnn----ctttgtg 106  Q
    |||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||                  |||| ||    
T  23335522 atcatcatgtgtggctggaagagatgaagactcatctgagttctttgttttcttttccataatgttgaaaattgtagagagagagagggagagctttatg 23335621  T
Q  107 tttt-agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtga 205  Q
    |||| |||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  23335622 tttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgtacactagatctgatggttgtga 23335721  T
Q  206 agtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    | ||||||||||||||| ||| |||       ||||| |||||||||||||    
T  23335722 aatgtttatgcacggtgcatacggatttccttatgcaccataacttttgcc 23335772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 2826976 - 2827103
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  2826976 ctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaagataattacacgtgtacactagatctgatgg 2827075  T
Q  200 ttgtgaagtgtttatgcacggtgtataa 227  Q
    |||| |||||||||||||||||| ||||    
T  2827076 ttgtaaagtgtttatgcacggtggataa 2827103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 28070062 - 28070218
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||| |||||||| ||||||| |||||||||||| |    
T  28070062 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatag 28070161  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||||||||||||||| |||||||       ||||| |||||||||||||    
T  28070162 ttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 28070218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 25017052 - 25017256
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtnnnnnnnnnnnnnnctttgtgtttt 110  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||              |||| ||||||    
T  25017052 atcatcatgtgttgccggaagagatgaagactcatctgagtacttcgttttcttttccagaatgttgaaaattgtagagagagggagagctttatgtttt 25017151  T
Q  111 agtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgt 210  Q
    |||||||||||| ||||||||||||||               |||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  25017152 agtgagagaaatgtttgaagcaaatga---------------agtttgagaaacctaaaattattacacgtgtacactagatctgatggttgtgaagtgt 25017236  T
Q  211 ttatgcacggtgtataagga 230  Q
    |||||||||||| |||||||    
T  25017237 ttatgcacggtgcataagga 25017256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 16668743 - 16668833
Alignment:
Q  140 tttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataagga 16668833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 18465506 - 18465582
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgca 217  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18465582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 13363024 - 13362951
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgt 85  Q
    |||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13363024 atcatcatgtgtggccggaagagat-aagactcatttgagttcttcgttttcttttccagaatgttgaaaattgt 13362951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 34329223 - 34329156
Alignment:
Q  160 gaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  34329223 gaagcctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 34329156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 42512391 - 42512347
Alignment:
Q  41 ctcatctgagttcttcgttttcttttccagaatgttgaaaattgt 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42512391 ctcatctgagttcttcgttttcttttccagaatgttgaaaattgt 42512347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 42512269 - 42512225
Alignment:
Q  186 actagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  42512269 actagatctgatggttgtgaagtgtttatgcacggtggataagga 42512225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 8949003 - 8948930
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgc 216  Q
    ||||||| ||||||||||||||||||| ||||||   ||||||| |||| ||||||| ||| ||||||||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttatgc 8948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 42512324 - 42512273
Alignment:
Q  106 gttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagttt 157  Q
    ||||||||||||||||| ||||||| ||||||| |||||||| |||||||||    
T  42512324 gttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 13553049 - 13553010
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  13553049 atctgatggttgtgatgtgtttatgcacggtgcataagga 13553010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 14940356 - 14940395
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  14940356 atctgatggttgtgatgtgtttatgcacggtgcataagga 14940395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 15416730 - 15416691
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  15416730 atctgatggttgtgatgtgtttatgcacggtgcataagga 15416691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 4675025 - 4674987
Alignment:
Q  192 tctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  4675025 tctgatggttgtgaagtgtttatgcagggtgcataagga 4674987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 28070012 - 28070050
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  28070012 atcatcatgtgtggccggaagagatgaagactcatctga 28070050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 33868248 - 33868182
Alignment:
Q  164 cctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||| |||||||| || |||| | || ||| ||||||||||||||||||||||| |||| |||||||    
T  33868248 cctaggattattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataagga 33868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 26637837 - 26637874
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataag 228  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  26637837 atctgatggttgtgatgtgtttatgcacggtgcataag 26637874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 16552642 - 16552678
Alignment:
Q  194 tgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||| |||| |||||||    
T  16552642 tgatggttgtgaagtgtttatgcatggtgcataagga 16552678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 24737605 - 24737722
Alignment:
Q  105 tgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtg 204  Q
    |||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||    
T  24737605 tgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacgtgtacactagatctgatggttgtg 24737704  T
Q  205 aagtgtttatgcacggtg 222  Q
    ||||||||||||||||||    
T  24737705 aagtgtttatgcacggtg 24737722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 33346280 - 33346438
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||| ||| ||||||||   |||||||||||||||||  ||||||| ||||||| ||||||| ||||||    
T  33346280 ctttatgttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttgagaagcctataattattacacgtgtacactagatttgatgg 33346379  T
Q  200 ttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgccct 258  Q
    ||||||||||||||||||||||| |||||||       ||||| |||||||||||||||    
T  33346380 ttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccct 33346438  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 877364 - 877246
Alignment:
Q  100 ctttgtgttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatgg 199  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||| ||  ||||| ||||    
T  877364 ctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattatacgtgtacacctgatctaatgg 877265  T
Q  200 ttgtgaagtgtttatgcac 218  Q
    |||||||||||||||||||    
T  877264 ttgtgaagtgtttatgcac 877246  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 29157341 - 29157252
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||| |||||||||||||||||||  ||||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcataagga 29157252  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 18611304 - 18611228
Alignment:
Q  141 ttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgca 217  Q
    ||||||| |||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18611228  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 34399740 - 34399641
Alignment:
Q  157 tgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    ||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||  |||||| |||||||       ||||| |||||||||||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataaggatttccttatgcaccataacttttgcc 34399641  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 15034942 - 15035040
Alignment:
Q  158 gagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||| |||||||| || |||| |||||||||||||||||||||   ||||||||||||| |||||||       ||||| |||||||||||||    
T  15034942 gagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatgcacggtgcataaggatttccttatgcaccataacttttgcc 15035040  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 35119310 - 35119261
Alignment:
Q  181 tgtagactagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  35119310 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 35119261  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 1449608 - 1449569
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  1449608 atctgatggttgtgatgtgtttatgcacggtgcataagga 1449569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 1536896 - 1536935
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  1536896 atctgatggttgtgatgtgtttatgcacggtgcataagga 1536935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 6900869 - 6900830
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6900869 atctgatggttgtgatgtgtttatgcacggtgcataagga 6900830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 31216728 - 31216689
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  31216728 atctgatggttgtgatgtgtttatgcacggtgcataagga 31216689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 24737542 - 24737580
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  24737542 atcatcatgtgtggccggaagagatgaagactcatctga 24737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 30908713 - 30908679
Alignment:
Q  196 atggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||||| |||||||    
T  30908713 atggttgtgaagtgtttatgcacggtgcataagga 30908679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 12394387 - 12394419
Alignment:
Q  198 ggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||||||||||||| |||||||    
T  12394387 ggttgtgaagtgtttatgcacggtgcataagga 12394419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 107 - 256
Target Start/End: Original strand, 25148 - 25297
Alignment:
Q  107 ttttagtgagagaaatatttgaagcaaatgaaatttgatttagtgtagtttgagaagcctaagattattatacgtgtagactagatctgatggttgtgaa 206  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||||| |||| ||||||||||||||||    
T  25148 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaa 25247  T
Q  207 gtgtttatgcacggtgtataaggannnnnnnatgcagcataacttttgcc 256  Q
    |||||||||||||||| |||||||       ||||| |||||||||||||    
T  25248 gtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 25297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 25074 - 25112
Alignment:
Q  11 atcatcatttgtagccggaagagatgaagactcatctga 49  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  25074 atcatcatgtgtggccggaagagatgaagactcatctga 25112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 7116 - 7046
Alignment:
Q  157 tgagaagcctaagattattatacgtgtagactagatctgatggttgtgaagtgtttatgcacggtgtataa 227  Q
    |||||| |||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7116 tgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataa 7046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 10670 - 10714
Alignment:
Q  186 actagatctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10670 actagatctgatggttgtgaagtgtttatgcacggtgtataagga 10714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 676 - 715
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  676 atctgatggttgtgatgtgtttatgcacggtgcataagga 715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 33750 - 33711
Alignment:
Q  191 atctgatggttgtgaagtgtttatgcacggtgtataagga 230  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  33750 atctgatggttgtgatgtgtttatgcacggtgcataagga 33711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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