View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_27 (Length: 375)
Name: NF20985_low_27
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 13448948 - 13449294
Alignment:
| Q |
13 |
aatataccgattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgag |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448948 |
aatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgag |
13449047 |
T |
|
| Q |
113 |
acataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaa |
212 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13449048 |
acttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaa |
13449147 |
T |
|
| Q |
213 |
gtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtg |
312 |
Q |
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| T |
13449148 |
gtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagta |
13449247 |
T |
|
| Q |
313 |
tggatcttccaagtggtggtggggtccgtagttgaagacatagattc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13449248 |
tggatcttccaagtggtggtggggtccgtagttgaagacatagattc |
13449294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 359
Target Start/End: Original strand, 13440794 - 13441131
Alignment:
| Q |
22 |
attacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagta |
121 |
Q |
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||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| || | ||| ||||| |
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| T |
13440794 |
attacctttggcggttttccgcacaaggttatacgatgaggaaaatttggaacaacaaaggaacttgaatccaaatcagaattagtatcagaatgaagta |
13440893 |
T |
|
| Q |
122 |
aattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaac |
221 |
Q |
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| ||||||| || ||||| || |||||| ||||| | |||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||| | |
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| T |
13440894 |
agttgtttgcttggagggattccacgagagagacggtaaaaagtgacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagc |
13440993 |
T |
|
| Q |
222 |
ccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttc |
321 |
Q |
| |
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|||||| || | ||||||||||||||||||||| |||||||| ||||| ||||||||| |||| | | | | |||||||| |||||| |||||||||| |
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| T |
13440994 |
ccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttc |
13441093 |
T |
|
| Q |
322 |
caagtggtggtggggtccgtagttgaagacatagattc |
359 |
Q |
| |
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|||| ||| | | ||| || || |||||||||||||| |
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| T |
13441094 |
caagaggtcatagagtcagtggtggaagacatagattc |
13441131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 13455427 - 13455672
Alignment:
| Q |
21 |
gattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagt |
120 |
Q |
| |
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||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| | ||| |||| |
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| T |
13455427 |
gattaactttggcggtttttcacataaggtgatatgatgaggaaaatttggaacaacaaaggtacttgaatccgaatcaaaatttgtatcagaatgaagt |
13455526 |
T |
|
| Q |
121 |
aaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaa |
220 |
Q |
| |
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|||||||||||||||||||| | || |||||||| ||||||||||||| ||| || ||||||||||| || ||||||||||||| |||||||||||||| |
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| T |
13455527 |
aaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgttaggaatctgaaacttatgggccaagtcattaa |
13455626 |
T |
|
| Q |
221 |
cccatggatacgtggagtcggagatgatacaatccggtggatcatt |
266 |
Q |
| |
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||||||| || | | |||||||||||||||||| || |||||||| |
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| T |
13455627 |
cccatgggtatgcagcgtcggagatgatacaatctgggggatcatt |
13455672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 330
Target Start/End: Complemental strand, 3417112 - 3416813
Alignment:
| Q |
25 |
acctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaat |
124 |
Q |
| |
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|||||||||||||| | |||| ||||||| || ||||||| |||||||| | | ||||||||||||||||||||||||| || | |||||||| |
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| T |
3417112 |
acctttggtggtttactgcacatggtgataggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgta------aaaagtaaat |
3417019 |
T |
|
| Q |
125 |
tgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaaccca |
224 |
Q |
| |
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| |||||| | |||| || || ||| |||| | ||||| | |||| ||||| |||||| || ||||| |||| ||| | |||||||||||||||||| |
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|
| T |
3417018 |
tatttgttctaagggattccatgagcaagactggaaaaacggacaaaacattgtatgtgaaattagggatttgaagcttctgggccaagtcattaaccca |
3416919 |
T |
|
| Q |
225 |
tggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttccaa |
324 |
Q |
| |
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||| || | |||||||||||||||||||| |||||||| || | |||||||||| |||| ||| | |||||||| |||||| ||| |||||||||| |
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| T |
3416918 |
tgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaa |
3416819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 359
Target Start/End: Original strand, 12541300 - 12541616
Alignment:
| Q |
43 |
cacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggttt |
142 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||| | | | ||| ||||||||| || | |||| || |
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|
| T |
12541300 |
cacatggtgatacgatgaggaaaatttggaacgacatacgaacttgaatccgaatcagaatcagaattggtatgaagcaaattgttttttctaagggatt |
12541399 |
T |
|
| Q |
143 |
gcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcgga |
242 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||||||| || || | || | |||| |||||||||||| |||||| || | ||||||| |
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|
| T |
12541400 |
ccatgagggagacagcaaaaagagaggatccattgaatgtgaaattgggtacttgtagcttacgagccaagtcattaccccatgagtaagaagagtcggc |
12541499 |
T |
|
| Q |
243 |
gatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttccaagtggtggtggggtccgta |
342 |
Q |
| |
|
||||||||||| ||||||| |||| ||| ||||| |||| ||| | | |||||||| || ||| |||| || ||||||| ||| ||||||| || |
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| T |
12541500 |
aatgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcaccattgtgaattttccaagaggtaatggggtcagtg |
12541599 |
T |
|
| Q |
343 |
gttgaagacatagattc |
359 |
Q |
| |
|
|| || ||||||||||| |
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|
| T |
12541600 |
gtggaggacatagattc |
12541616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 28386099 - 28386239
Alignment:
| Q |
190 |
gggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt |
289 |
Q |
| |
|
||||| |||| ||| | ||||||||||||| |||||| | | |||||| | || |||||||||||||||| ||||||| ||||||||||| | || |
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|
| T |
28386099 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgctt |
28386198 |
T |
|
| Q |
290 |
ctttaaggagcatcgcgccagtgtggatcttccaagtggtg |
330 |
Q |
| |
|
| || |||||||| |||||| | |||||||||||||||||| |
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|
| T |
28386199 |
cattgaggagcattgcgccattatggatcttccaagtggtg |
28386239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 12483041 - 12482964
Alignment:
| Q |
27 |
ctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||| |||| ||||| |
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|
| T |
12483041 |
ctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaacgaaagaatgtgaatccaaatcggaatc |
12482964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 12589727 - 12589688
Alignment:
| Q |
46 |
aaggtgatatgatgaggaaaatttggaacaacaaaggaac |
85 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
12589727 |
aaggtgatacgatgaggaaaatttggaacaacaaaggaac |
12589688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 48965939 - 48966005
Alignment:
| Q |
38 |
ttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
| |
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||||| ||||||||||| | ||||| |||||| |||||||||| |||| ||||| ||||||||||| |
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|
| T |
48965939 |
ttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatc |
48966005 |
T |
|
Back To:
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